PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00045.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 717aa    MW: 82497.8 Da    PI: 8.2959
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00045.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.9e-07233251624
                                     -SGGGGTS--TTTTT-SS- CS
                         zf-CCCH   6 CrffartGtCkyGdrCkFa 24 
                                     C+f+++tG C++G rC++a
  Zpz_sc00045.1.g00060.1.sm.mkhc 233 CPFHLKTGACRFGVRCSRA 251
                                     ****************976 PP
2zf-CCCH231.4e-07308335126
                                     --S---SGGGGTS..--TTTTT-SS-SS CS
                         zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                                     +k ++C  ++r+   tC++G+ C+F H+
  Zpz_sc00045.1.g00060.1.sm.mkhc 308 WKAAICGEYMRSRykTCSHGAACNFVHC 335
                                     7889***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.559227251IPR000571Zinc finger, CCCH-type
SMARTSM0035613228251IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-5232251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3307.8E-11256303IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549282.48E-8257303IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003560.078307336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.662307337IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5308335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MSAPVAETAD GSGEAGPHAA APATRREKLK ERKKERRRRA RREAAARARE AAEAEAAVDP  60
EEETRLLELE LAQAAEESDH ARQAFEEAER RWLEAAAARA AKRAAKAAEE EEARAAEASS  120
RHKDGDGNKL EEDDEWEYIE EGPAEIIWQG NEIIVKKKKV KVPKGVKEKL PTQESENWLN  180
GSQEERPTSN PLPPKSVSAV AQRREPSLSA QEVLDKVAHE TPNFGTEQDK AHCPFHLKTG  240
ACRFGVRCSR ALLWSRMKAL RNGSFHLRGN VYVHYKSLDL ALLAHNSMNG RYFAGKQISC  300
EFVALTKWKA AICGEYMRSR YKTCSHGAAC NFVHCFRNPG GDYEWSDWDN PPPKYWIRKM  360
TALFGLSADT NSLSTTPDFE CSQGSDRKRL KSSGDRYVSR RLKDEDGYKQ RFCRDYSHSM  420
EEHCSRSMKN EQSRHRRDPH ALDKHRSREI EGNKGKYPQN GRESHRHLQS HRHLHEERYK  480
CDHSGREKGD DGKIRSTKNR SDQQGYLEPR SSDWHSDYTD LSNSPSGRST SRYVDYKRRR  540
QSSEDYNTGK HSSFVHRSGE EEDRTKRHSS RYSEDDYYDK KNDYYDEKND GRGKTGKGGN  600
HHDDSDDRWV ATNSDVDSDY EIYQRSSSNS SNSEQKDEAH SDAEARHQRS LMEAKDHKSR  660
RRHSEHRQYR DTEEDTSYSD ATDSSSDSWG RRSRSSEEKV SKHRSRKNID QSREKAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13542RRRRARRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00045.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0239761e-102BT023976.1 Zea mays clone EL01N0356C06 mRNA sequence.
GenBankJF6811441e-102JF681144.1 Zea mays RGH3 splicing factor mRNA, complete cds.
GenBankJN7914171e-102JN791417.1 Zea mays rough endosperm 3-umu1 alpha isoform (Rgh3) mRNA, Rgh3-umu1 allele, complete cds, alternatively spliced.
GenBankJN7914181e-102JN791418.1 Zea mays rough endosperm 3-umu1 gamma isoform (Rgh3) mRNA, Rgh3-umu1 allele, complete cds, alternatively spliced.
GenBankJN7914191e-102JN791419.1 Zea mays rough endosperm 3 alpha isoform (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914201e-102JN791420.1 Zea mays rough endosperm 3 beta isoform 1 (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914231e-102JN791423.1 Zea mays rough endosperm 3 beta isoform 4 (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914241e-102JN791424.1 Zea mays rough endosperm 3 gamma isoform 1 (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914271e-102JN791427.1 Zea mays rough endosperm 3 gamma isoform 4 (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914281e-102JN791428.1 Zea mays rough endosperm 3 gamma isoform 5 (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914291e-102JN791429.1 Zea mays rough endosperm 3 gamma isoform 6 (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914301e-102JN791430.1 Zea mays rough endosperm 3 gamma isoform 7 (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914311e-102JN791431.1 Zea mays rough endosperm 3 gamma isoform 8 (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914321e-102JN791432.1 Zea mays rough endosperm 3 gamma isoform 9 (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914331e-102JN791433.1 Zea mays rough endosperm 3 delta isoform (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914341e-102JN791434.1 Zea mays rough endosperm 3 zeta isoform (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914351e-102JN791435.1 Zea mays rough endosperm 3 eta isoform (Rgh3) mRNA, complete cds, alternatively spliced.
GenBankJN7914371e-102JN791437.1 Zea mays rough endosperm 3 (Rgh3) mRNA, complete sequence; alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453991.20.0zinc finger CCCH domain-containing protein 16 isoform X2
SwissprotQ6YVX91e-142C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A1Z5RNF90.0A0A1Z5RNF9_SORBI; Uncharacterized protein
STRINGTraes_5BL_938BFB459.21e-177(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92961317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.15e-89C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]