PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00045.1.g00570.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 223aa    MW: 25055.5 Da    PI: 9.5838
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00045.1.g00570.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.14.9e-2391187184
                      trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                                   +Wt ++v++L+ a+++++e+++++             +kk++W+ vs +m ergf +sp+qC++k+++lnkryk+++e+ +
  Zpz_sc00045.1.g00570.1.am.mk  91 KWTSDMVKLLVSAVSYVDEEVEADHgsgsgrrkhavlKKKGKWKPVSMAMTERGFAVSPQQCEDKFNDLNKRYKRLTEILG 171
                                   7*********************876667788899999*******************************************9 PP

                      trihelix  70 kr.tsessstcpyfdq 84 
                                   ++ +++ +++ +++++
  Zpz_sc00045.1.g00570.1.am.mk 172 RGrACKIVEKPALLEK 187
                                   9956887777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.8E-2189214No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEGNVPPRAL IPGSPFDLEP AMQQPRRQQF HFAQPQVHQG AFAVPEPNPA QELRSVVKTS  60
LSDEEDAYDG LHDNGKTAAA AAAASQWHRV KWTSDMVKLL VSAVSYVDEE VEADHGSGSG  120
RRKHAVLKKK GKWKPVSMAM TERGFAVSPQ QCEDKFNDLN KRYKRLTEIL GRGRACKIVE  180
KPALLEKISL SARLKEEAKK HLNSKHLHYE EMCSYHNRNL LPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00045.1.g00570.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0189131e-126BT018913.1 Zea mays clone EL01T0403G05.d mRNA sequence.
GenBankBT0633741e-126BT063374.1 Zea mays full-length cDNA clone ZM_BFc0058B03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952693.11e-111uncharacterized protein LOC101766818
RefseqXP_004952694.11e-111uncharacterized protein LOC101766818
TrEMBLA0A1E5VNL41e-111A0A1E5VNL4_9POAL; Uncharacterized protein
TrEMBLK3YT021e-110K3YT02_SETIT; Uncharacterized protein
STRINGSi017397m1e-110(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-53sequence-specific DNA binding transcription factors