PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00047.1.g00410.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 247aa    MW: 25776.4 Da    PI: 8.0522
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00047.1.g00410.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.91.7e-43281271100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear++dPvyG+v+ i+
  Zpz_sc00047.1.g00410.1.am.mk  28 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSLAYEAEARVKDPVYGCVSAIS 108
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkee 100
                                    lq+q+++l++el+++++e
  Zpz_sc00047.1.g00410.1.am.mk 109 MLQRQVHHLQKELDAANAE 127
                                   *************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.09727128IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-4328125IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MALPSSTSNS AVSPVAAPGS TTPGAGAPCA ACKFLRRKCL PGCVFAPYFP PEEPQKFANV  60
HKVFGASNVT KLLNELLPHQ REDAVSSLAY EAEARVKDPV YGCVSAISML QRQVHHLQKE  120
LDAANAELLR YACGDIGIPT ALPVSAAPRF SATMPSTGQL AAATAAGGMY SGRRLSAIDG  180
ISLPPSSAGC YFMRNNVMSS PGADVAPVLP YAAMGNWAVN VISVTTTTTS GSESIGMDHK  240
ERRDSSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-81211474131LOB family transfactor Ramosa2.1
5ly0_B2e-81211474131LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00047.1.g00410.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818403.11e-145protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_025818404.11e-145protein LATERAL ORGAN BOUNDARIES-like
TrEMBLA0A1E5VHF81e-144A0A1E5VHF8_9POAL; Protein LATERAL ORGAN BOUNDARIES
STRINGPavir.J38993.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88133545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-62LBD family protein