PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00054.1.g00310.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 290aa    MW: 31809.8 Da    PI: 6.6235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00054.1.g00310.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.19e-10110165454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C.......TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.as....kapskKlsKaeiLekAveYIksL 54 
                                    h ++Er+RR+++ + f++L +++P        ++ +   +K++ L  ++eY+++L
  Zpz_sc00054.1.g00310.1.am.mk 110 EHVIAERKRREKMHHQFATLASIVPDiTKwmmlSEFNLQTDKVSLLDSTIEYVHKL 165
                                   6999**********************666************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-13102178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.83106165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-7110165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12110179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.74E-9111170No hitNo description
SMARTSM003533.9E-10112171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.543222290IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MQKLAESLAN ELWGQPQEQQ DNQQEQCGYR SPSLTGSHFV GHANSTNRTT ISSGVSNNMS  60
PFTEASSSPV NLAAKEYTQQ GVYSTTTVKC CSSSMTAKGG ARRSTSSVQE HVIAERKRRE  120
KMHHQFATLA SIVPDITKWM MLSEFNLQTD KVSLLDSTIE YVHKLRDRLK ALQDELQTTG  180
SNTEESPAFD ADCCVAGSKP NDGGDEAVSP KIEVDVRGTT LLLRLVCREK KGVLLTVLME  240
LEKHRISIVN TNVVPFAESS LNITITAQMD NGSSTTTELV KALNLALRNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119ERKRRE
2115120RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00054.1.g00310.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685471.11e-94transcription factor bHLH19-like
TrEMBLK4ACR63e-93K4ACR6_SETIT; Uncharacterized protein
STRINGSi036673m5e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.15e-26bHLH family protein