PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00057.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 705aa    MW: 75914.9 Da    PI: 6.515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00057.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.4e-05538559425
                                   HHHHHHHHHHHHHHHHHHHHHC CS
                           HLH   4 ahnerErrRRdriNsafeeLre 25 
                                   +h e+Er+RR+++N++f  Lr 
  Zpz_sc00057.1.g00020.1.am.mk 538 NHVEAERQRREKLNQRFYALRA 559
                                   799**************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.1E-5293273IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.343534591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-10537596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.36E-8537578No hitNo description
Gene3DG3DSA:4.10.280.109.3E-6538596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-4540580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MPPLIKRASV LFWDISLAFP SAPSVSTISP LAPVPHPSMN LWTDDNASMM EAFMASADLT  60
WGTVGGDGSA GATPPPPFHQ MPAAAPAFNQ DTLQQRLQAI IEGSRETWTY AIYWQSSVDA  120
GSGASLLGWG DGYYKGCDED KRRQRPLTPA DQVEQEHRKR VLRELNSLIS GGAPAPDEAV  180
EEEVTDTEWF FLVSMTQSFS HGSGLPAQVF FSGQPNWISS GLSAAPCERA RQAYTFGLRT  240
MVCVPVGTGV LELGSTDVIF HTAESMGKIR SLFGGGAGPG SWQPQQQPAA GAEHAETDLW  300
LADTPATDMK DTMSHPAAEI SVSKPPQIHF ENVTTTTSTL TENPSPSVQA PSAPQTAVPV  360
PPQREHHQQQ SHIQQGPFRR ELNFSEFASN PSVVSGPPFF KPESGEILSF GADSTSRRNP  420
SPAPPTTTAP GSLFSQNTAT ITAAATNDAK NNNKRSMEAT SRASNTNLHA APTANEGMLS  480
FSSAPTTRPS TGTGAPAKSE SDHSDLDARV VAPPPPEAEK RPRKRGRKPA NGREEPLNHV  540
EAERQRREKL NQRFYALRAV ASLLGDAISY INELRGKLTA LESDKETMQF QIEALKKERD  600
ARPAPQAGGF GHDAGPRCHA CHKRNHPSAR LMTALRELDL DVYHASVSVV AVKMASRIYS  660
QDQLNAALYS RLAEPGTVMG RNDTVTLTHL LLVVVVVVTV NSGMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-61862732192Transcription factor MYC3
4rqw_B4e-61862732192Transcription factor MYC3
4rs9_A4e-61862732192Transcription factor MYC3
4yz6_A4e-61862732192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1519527KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00057.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0855771e-173BT085577.2 Zea mays full-length cDNA clone ZM_BFc0036D10 mRNA, complete cds.
GenBankBT0860121e-173BT086012.2 Zea mays full-length cDNA clone ZM_BFc0098F02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698381.10.0LOW QUALITY PROTEIN: transcription factor MYC2-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A1E5W7330.0A0A1E5W733_9POAL; Transcription factor MYC2
STRINGGRMZM2G001930_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-113bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]