PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00057.1.g00080.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 1184aa MW: 128190 Da PI: 6.6104

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00057.1.g00080.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.9e-20	74	129	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Zpz_sc00057.1.g00080.1.am.mk 74 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 129 688999***********************************************998 PP
2	START	117.1	2.4e-37	348	526	43	205
SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEE CS START 43 dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg........galqlmvaelqalsplvp.Rdfv 110 ++e +r+s+vv+m++ +lv +l+ + +W e ++ ka +++vis g g l lm+a+lq++splvp R++v Zpz_sc00057.1.g00080.1.am.mk 348 TRTEGSRDSAVVIMNSITLVDAFLNAN-KWMELFPsivsKARIIQVISHGaasgnmgsGSLLLMQADLQFPSPLVPiREVV 427 57899********************.******9************************************** PP EEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHH CS START 111 fvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvks 187 f Ry+ + +g+w ivd v+ + ssvv++ ++pSg++i++++ng+s+v+wveh++ g h +++ v Zpz_sc00057.1.g00080.1.am.mk 428 FFRYCVHnSDEGTWSIVDFPVEGFDLEVLqASSVVKSLRRPSGCMIQDMPNGYSRVVWVEHMEIVGEEKplHPVFKDYVAG 508 ***9999******998888888*****************************98765449****** PP HHHHHHHHHHHHTXXXXX CS START 188 glaegaktwvatlqrqce 205 g+a+ga +wv+ lqrqce Zpz_sc00057.1.g00080.1.am.mk 509 GAAFGATRWVSLLQRQCE 526 ***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.55E-19	65	132	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	71	131	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-20	72	135	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-19	72	135	IPR001356	Homeobox domain
CDD	cd00086	1.10E-18	74	132	No hit	No description
Pfam	PF00046	5.3E-18	74	129	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	106	129	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.339	281	530	IPR002913	START domain
SuperFamily	SSF55961	1.14E-23	284	526	No hit	No description
SMART	SM00234	5.3E-16	290	527	IPR002913	START domain
CDD	cd08875	2.94E-91	301	526	No hit	No description
Pfam	PF01852	2.4E-30	348	526	IPR002913	START domain
SuperFamily	SSF55961	1.22E-10	538	743	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1184 aa Download sequence Send to blast
MGALQVSKDE EMELEMDMEL SGGSGSGHFD GLLGFADVDD DRPENKPQNG CLDIQPADGG 60 KQEQNNQLVV NGKKKRYHRH TAHQIQQMEA LFKECPHPDD KQRLKLSQEL GLKPRQVKFW 120 FQNRRTQMKA QQDRADNVLL RAENESLKGE NFRLQAAIRN VVCPNCGHAA VLGEMSFEEQ 180 QLRIENARLK EELDRLACIT TRYGGGGGWQ SSLSASGLGV STPSALLMPP VDLDMNVYSR 240 HFTYPPSIME NIPPVMALQP QISNHHAASS PYVSGLMAPV LEQDRQLVVD LAATAADALA 300 KMCRTGEPLW APRGGASAEV MVPEEHSRIF SWPVDGGKQS EASAANTTRT EGSRDSAVVI 360 MNSITLVDAF LNANKWMELF PSIVSKARII QVISHGAASG NMGSGSLLLM QADLQFPSPL 420 VPIREVVFFR YCVHNSDEGT WSIVDFPVEG FDLEVLQASS VVKSLRRPSG CMIQDMPNGY 480 SRVVWVEHME IVGEEKPLHP VFKDYVAGGA AFGATRWVSL LQRQCELIRT PEARANMMKL 540 SQRMITTFCA NISAAGSQSW TALSDCTEDT FRVATRKNND LGQPSGVILT AVSTSWLPFS 600 HQRVFELLAD EQQRCQAASN SSQNVELLLQ ESSTHPDGGS LVVFATVDVD AIQVTMSGDD 660 PSQIPLLPLG FAIFPAPNPS PAATSANSGN GESSSSGHTD EPASGCLLTV GMQVLASAVP 720 SAKLNLSSVT AINSHVCNAI HQITTALKGT GTPQAESPTA RRRVCEEESR ANQLRPHPGI 780 PGSLLLLSGF TVWLVAVAGV RLGGVHALVL PFLFLPRPSS YLNALPFCGV ASHWIPVFSR 840 FAFARDMLVS GVILVGRCLV GGGDMPLVVN EATDCVVFRA LLSSSTASPA FLCIVGSGGR 900 WCGRATVDCA LRVSGFPRRI RTYEDSRSLS PHKADDGASN DLAAWWDTED LNSSSDSCRA 960 TASMSSAQSH NSEERAWTFC CSTQSRDVLK YSARRPSISS AWSSASDLSD NNSALPGHCE 1020 VLTGRLVHEV VDRALQQFVW SQVSPRGCGL ESEFPRHPIQ KKNLLGIIRS NIALRTGHGF 1080 VPCGLRSLEP PSKPIPLWLN NHRFPSSAIA MDLCLDANIR LPLVGCLIAS ASIWLQSTVT 1140 TPPVAPSPTS DFVGSPASKE RDCLVGSWGK PLHYSLGASK LFGR

Sequence ? help Back to Top

Protein Sequence Length: 1184 aa Download sequence Send to blast

MGALQVSKDE EMELEMDMEL SGGSGSGHFD GLLGFADVDD DRPENKPQNG CLDIQPADGG  60
KQEQNNQLVV NGKKKRYHRH TAHQIQQMEA LFKECPHPDD KQRLKLSQEL GLKPRQVKFW  120
FQNRRTQMKA QQDRADNVLL RAENESLKGE NFRLQAAIRN VVCPNCGHAA VLGEMSFEEQ  180
QLRIENARLK EELDRLACIT TRYGGGGGWQ SSLSASGLGV STPSALLMPP VDLDMNVYSR  240
HFTYPPSIME NIPPVMALQP QISNHHAASS PYVSGLMAPV LEQDRQLVVD LAATAADALA  300
KMCRTGEPLW APRGGASAEV MVPEEHSRIF SWPVDGGKQS EASAANTTRT EGSRDSAVVI  360
MNSITLVDAF LNANKWMELF PSIVSKARII QVISHGAASG NMGSGSLLLM QADLQFPSPL  420
VPIREVVFFR YCVHNSDEGT WSIVDFPVEG FDLEVLQASS VVKSLRRPSG CMIQDMPNGY  480
SRVVWVEHME IVGEEKPLHP VFKDYVAGGA AFGATRWVSL LQRQCELIRT PEARANMMKL  540
SQRMITTFCA NISAAGSQSW TALSDCTEDT FRVATRKNND LGQPSGVILT AVSTSWLPFS  600
HQRVFELLAD EQQRCQAASN SSQNVELLLQ ESSTHPDGGS LVVFATVDVD AIQVTMSGDD  660
PSQIPLLPLG FAIFPAPNPS PAATSANSGN GESSSSGHTD EPASGCLLTV GMQVLASAVP  720
SAKLNLSSVT AINSHVCNAI HQITTALKGT GTPQAESPTA RRRVCEEESR ANQLRPHPGI  780
PGSLLLLSGF TVWLVAVAGV RLGGVHALVL PFLFLPRPSS YLNALPFCGV ASHWIPVFSR  840
FAFARDMLVS GVILVGRCLV GGGDMPLVVN EATDCVVFRA LLSSSTASPA FLCIVGSGGR  900
WCGRATVDCA LRVSGFPRRI RTYEDSRSLS PHKADDGASN DLAAWWDTED LNSSSDSCRA  960
TASMSSAQSH NSEERAWTFC CSTQSRDVLK YSARRPSISS AWSSASDLSD NNSALPGHCE  1020
VLTGRLVHEV VDRALQQFVW SQVSPRGCGL ESEFPRHPIQ KKNLLGIIRS NIALRTGHGF  1080
VPCGLRSLEP PSKPIPLWLN NHRFPSSAIA MDLCLDANIR LPLVGCLIAS ASIWLQSTVT  1140
TPPVAPSPTS DFVGSPASKE RDCLVGSWGK PLHYSLGASK LFGR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00057.1.g00080.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983555.1	0.0	homeobox-leucine zipper protein ROC3
Refseq	XP_004983556.1	0.0	homeobox-leucine zipper protein ROC3
Refseq	XP_022679045.1	0.0	homeobox-leucine zipper protein ROC3
Swissprot	A2ZAI7	0.0	ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBL	A0A3L6THL5	0.0	A0A3L6THL5_PANMI; Homeobox-leucine zipper protein ROC3
TrEMBL	K4A5P8	0.0	K4A5P8_SETIT; Uncharacterized protein
STRING	Si034202m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7846	34	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7