PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00058.1.g00150.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 357aa    MW: 38235.8 Da    PI: 6.3398
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00058.1.g00150.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.2e-061252440
                      zf-B_box  4 rkCpeHeekelqlfCedCqq.llCedCllee.Hkg..Htvv 40
                                  r+C  +e  ++  +C++C+  +lC  C     H g  H++v
  Zpz_sc00058.1.g00150.1.am.mk 12 RRCGACETAPAAVHCRTCGGvFLCTACDARPaHAGagHERV 52
                                  79****************876********999987889875 PP
2zf-B_box24.74.8e-085297342
                      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                   ++C+ +e  ++   C+ +   lC+ C   +H+       Ht+vp+
  Zpz_sc00058.1.g00150.1.am.mk 52 VWVCEVCELAPAAVTCKADAAVLCAACDADIHEAnplarrHTRVPI 97
                                  689*****************************77899999**9997 PP
3CCT69.58.3e-24279322144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+l+RY+eKrk+R+FeK+i Y+sRKa+Ae+RpR+KGrF+k++
  Zpz_sc00058.1.g00150.1.am.mk 279 REARLMRYREKRKNRRFEKTIHYASRKAYAETRPRIKGRFAKRT 322
                                   9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0089954IPR000315B-box-type zinc finger
CDDcd000210.001081254No hitNo description
PROSITE profilePS5011910.4665097IPR000315B-box-type zinc finger
PfamPF006434.9E-65197IPR000315B-box-type zinc finger
CDDcd000217.32E-85397No hitNo description
SMARTSM003363.3E-95597IPR000315B-box-type zinc finger
PfamPF062035.2E-18279321IPR010402CCT domain
PROSITE profilePS5101716.341279321IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MELHKYWGVG GRRCGACETA PAAVHCRTCG GVFLCTACDA RPAHAGAGHE RVWVCEVCEL  60
APAAVTCKAD AAVLCAACDA DIHEANPLAR RHTRVPIAPI GSAAAAAAVE SMLFGTGEAA  120
EEQKATEHHQ HQHSLNLNVE AKDMKLDYLF SDLDPYLNVE LPRFQHADSV VPNGVAVELD  180
FTGGVGVKPS SYSPYAATSL AHSGSSSEVG VVPDALCVGG GHGSFELDFT RPKTQAYMPY  240
TATPPSHSVT VSSVDAAEVV PDQRGEAAAV PRPVTGEGRE ARLMRYREKR KNRRFEKTIH  300
YASRKAYAET RPRIKGRFAK RTDNDGDGDD AEPEAEGTVP TASSYMFDFG YSVVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00058.1.g00150.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001355037.11e-166uncharacterized protein LOC100281837
TrEMBLA0A3S6H6461e-178A0A3S6H646_9POAL; Constans-like protein
STRINGOPUNC06G21040.11e-166(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.13e-49CONSTANS-like 5