PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00058.1.g00870.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 255aa    MW: 27530.7 Da    PI: 9.0563
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00058.1.g00870.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.91.5e-301871255
                         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                                    pr+rWt+eLH++Fv+ave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+
  Zpz_sc00058.1.g00870.1.sm.mkhc 18 PRMRWTEELHRQFVKAVECLGGPDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71
                                    8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-291472IPR009057Homeodomain-like
PROSITE profilePS5129412.0151474IPR017930Myb domain
TIGRFAMsTIGR015572.5E-241871IPR006447Myb domain, plants
SuperFamilySSF466891.56E-161873IPR009057Homeodomain-like
PfamPF002491.2E-81970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MRGFERKGVR QYNRSEVPRM RWTEELHRQF VKAVECLGGP DEATPKRILQ LMGVKGVSIS  60
HIKSHLQMYR SSSNNSTHQA SHQKSISATA SNSKRVFWSR EDHCVYASDH DGNAASSDKN  120
ICAILLRNCS QSPQYQTPSL KQVFGNWEQS RGGRPPWHSS SMLTPGKAIR PSNGSSKKPA  180
EKQNGCDLTL SIGPCEDASS DADGSSTISE EVAARQGGES LGSPAAGGGL VAVKPESAPP  240
PALNLDLTIS SSWLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-161972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-161972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-161972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-161972356Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00058.1.g00870.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560371e-77EU956037.1 Zea mays clone 1555999 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810426.11e-111probable transcription factor KAN3
TrEMBLA0A2S3HH641e-110A0A2S3HH64_9POAL; Uncharacterized protein
STRINGPavir.Db00422.1.p1e-104(Panicum virgatum)
STRINGSi007179m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54933758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-26G2-like family protein