PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00074.1.g00630.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-other
Protein Properties Length: 305aa    MW: 33158.6 Da    PI: 9.2369
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00074.1.g00630.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.85e-0517801056
                                    HHHHHHHHHHHH..SSS--HHHHHHHHHHC...............TS-HHHHHHHHHHHHHHHH CS
                        Homeobox 10 eqleeLeelFek..nrypsaeereeLAkkl...............gLterqVkvWFqNrRakek 56
                                    +++ e+e+  ++  n  p ++  + LA+k                +++   V +WFqNrR+ ++
  Zpz_sc00074.1.g00630.1.sm.mkhc 17 SEVAEMEARLQQlnNTIPGRDVLQSLADKFsasperagraaiqpkQVPPLLVWNWFQNRRYSHR 80
                                    56666666666554667777777777777777777777776666667777789********988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-51282IPR009057Homeodomain-like
SuperFamilySSF466896.74E-91282IPR009057Homeodomain-like
CDDcd000860.003591380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRPPSSGAP AFRFLPSEVA EMEARLQQLN NTIPGRDVLQ SLADKFSASP ERAGRAAIQP  60
KQVPPLLVWN WFQNRRYSHR AKSVRPAPPP PSKMAPSGAD RLQHATTASA FRAAQTPAAA  120
AAGAHPGSSP AAGMMLLHFC LIGCSSPVTR KYGFVFLDSE QRKMNGSMFV NVCDSVLFHE  180
IVPLRKVCRR PETNYRLQMF HASRAAATPS ADVHTPPKQI KKESASNEKS PAEEKPLKQH  240
KMRDVKTDEV TVVSDHEEAA GNTARPTPSA QAEAHNDSTS DVAMDTDPAP VVEVDDEVQV  300
VDKVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00074.1.g00630.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0985605e-45FP098560.1 Phyllostachys edulis cDNA clone: bphyem205l01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.16e-60protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.16e-60protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.16e-60protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.16e-60protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1D6EP156e-94A0A1D6EP15_MAIZE; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
STRINGSi030167m2e-59(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.37e-27sequence-specific DNA binding transcription factors;sequence-specific DNA binding