PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00080.1.g00290.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 666aa    MW: 70053 Da    PI: 9.603
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00080.1.g00290.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.31e-06473530455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR++i +++  L++l+P +               Ka +L + ++Y++sLq
  Zpz_sc00080.1.g00290.1.am.mk 473 SHSLAERVRREKISERMKLLQSLVPGCNkvsylsLMLVCITGKALMLDEIINYVQSLQ 530
                                   8*************************86677776566666778888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-14467547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.58E-10467534No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13469547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627469529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-8475535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MFVSGPRTTT TVVFPGESAR ARPHNRNQPT RTCVRSLFRW MDPQRSIHAC PCCSGHAWPG  60
SSPAHVVTPR RPRSRLQSSA GSSPHASAAS RRCDAHTPVC MQQAPGAPYV LVRTSTHVSF  120
LEGSSSSSSS RLARSLGNRK TTTRKKPETA AALKIVLRLD PRPGRSAAVQ RRGWHLELAA  180
RPSPSRRPAG PPSAARQTTL LTALFFPLSA SSSRPHSPPT FRRTVSNASQ EMADEHFFPV  240
GDFPSGPPPG LESLDAAACA AAMAPFRMLP WASEHPIPTD SAATATAHFD SALSSLVTSP  300
AHAGCFGDDD DVAVGDLIGR LGSICNNAAA SANNSCYSTP LSSPPRGASS PAGLAFRQGG  360
HFHYPGPGAP PXXXLGGGAA PASENVAEAE TNPAVPAKGD GAARKRKAAT AGKGKARTAA  420
GNGSGSPKRP KVTGDGDTDD VAAGDAEQDT KPKPEPAKDY IHVRARRGQA TDSHSLAERV  480
RREKISERMK LLQSLVPGCN KVSYLSLMLV CITGKALMLD EIINYVQSLQ RQVEFLSMKL  540
STMNPELDID AQFLPASDND AVVSPPPSSD SELRSGFIWL RPACPPSQPL INRMHHHQTV  600
PLGYPDQQDP FAGAAAVHPA MLDPCTTGSA FYHGAGAGFG GWDAAQDQLR AQPAPPPPPG  660
PGPAAP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00080.1.g00290.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745734e-47EU974573.1 Zea mays clone 453265 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751112.15e-89transcription factor bHLH78 isoform X1
TrEMBLA0A0A8YTR01e-101A0A0A8YTR0_ARUDO; Uncharacterized protein
STRINGTRIUR3_34826-P11e-85(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-42bHLH family protein