PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00084.1.g00060.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 421aa MW: 48502.9 Da PI: 9.3411

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00084.1.g00060.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	1e-06	11	34	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C ++r G C++ d+C+FaHg Zpz_sc00084.1.g00060.1.sm.mkhc 11 YKTKMCALWQR-GGCSR-DTCSFAHG 34 9********.*.*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	9.0E-12	5	40	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.67E-5	9	39	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.554	10	36	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MLGPPRRGPA YKTKMCALWQ RGGCSRDTCS FAHGSTELRR FPGSRTSFPP RLGRRDYRGG 60 DFRDRFDRRR SPRRMYSPDR DSRGHRSLRD RRPTSQERES SYSRSPSRRS ERRHEKKPDD 120 GETNSSRSLS VSDNNDDRKD KLSSGDNKED HEKQLKGIRE DMEILREDKS HLEIILEAKN 180 VEVRKFFSRI NDLDLQLKKE KEECHRITSK MKKFIKAHGR LLKTQEELKR SQARFERLGD 240 LLASDILKRG ANEEGSSINV DEDPYGYERS PNAAAPRKRS SEEAKAVKKR REPDSDTISR 300 PNKYRSEGTV AELGKQNKGS ETIKSSYLKK KLWEDEKDKL GNDVSSAKTD KVKDSPVYVL 360 PSTGMAAHAM DDPIEAVELE NRHEQMDASL ENDADEETRL PIMRPCSLPP YEGDDEEVDV 420 D

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MLGPPRRGPA YKTKMCALWQ RGGCSRDTCS FAHGSTELRR FPGSRTSFPP RLGRRDYRGG  60
DFRDRFDRRR SPRRMYSPDR DSRGHRSLRD RRPTSQERES SYSRSPSRRS ERRHEKKPDD  120
GETNSSRSLS VSDNNDDRKD KLSSGDNKED HEKQLKGIRE DMEILREDKS HLEIILEAKN  180
VEVRKFFSRI NDLDLQLKKE KEECHRITSK MKKFIKAHGR LLKTQEELKR SQARFERLGD  240
LLASDILKRG ANEEGSSINV DEDPYGYERS PNAAAPRKRS SEEAKAVKKR REPDSDTISR  300
PNKYRSEGTV AELGKQNKGS ETIKSSYLKK KLWEDEKDKL GNDVSSAKTD KVKDSPVYVL  360
PSTGMAAHAM DDPIEAVELE NRHEQMDASL ENDADEETRL PIMRPCSLPP YEGDDEEVDV  420
D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	290	RKRSSEEAKAVKKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00084.1.g00060.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002451585.2	0.0	zinc finger CCCH domain-containing protein 13 isoform X1
Swissprot	Q6H7U2	0.0	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	A0A194YMV6	0.0	A0A194YMV6_SORBI; Uncharacterized protein
STRING	GRMZM2G119640_P04	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	8e-20	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]