PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00088.1.g00770.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 131aa MW: 14078 Da PI: 4.1717

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00088.1.g00770.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	70.3	6.7e-22	15	131	6	134
YABBY 6 sseqvCyvqCnfCntilavsvPsts....lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenl 82 seq+ yvqC+fC+til+vsvPs s l k+v+v+CG C+ +lsv+l ++ + ++++ l l+e +v+ Zpz_sc00088.1.g00770.1.sm.mk 15 LSEQLGYVQCSFCTTILLVSVPSYSdalqLTKTVAVQCGNCAGVLSVTLPPQTPT-PVVE-LRLP-----LQEPGVDPPPR 88 689*****************9875555789***********99886644.4443.2222.....33344444333 PP YABBY 83 ksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134 +s + ++ +++ +l+ e e+v v pv++PP +rqr Psayn+fik Zpz_sc00088.1.g00770.1.sm.mk 89 ESEDGSSG---EDR---ELEA-EAEDV--VFPVNKPPVRRQRTPSAYNCFIK 131 32222222...222...2333.33444..469*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.2E-21	16	131	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MSSSPECSPC LGILLSEQLG YVQCSFCTTI LLVSVPSYSD ALQLTKTVAV QCGNCAGVLS 60 VTLPPQTPTP VVELRLPLQE PGVDPPPRES EDGSSGEDRE LEAEAEDVVF PVNKPPVRRQ 120 RTPSAYNCFI K

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00088.1.g00770.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958092.1	4e-45	protein YABBY 7
Swissprot	A2PZN8	8e-24	YAB7_ORYSJ; Protein YABBY 7
TrEMBL	A0A368Q749	5e-45	A0A368Q749_SETIT; Uncharacterized protein
STRING	Si032004m	1e-45	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13625	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	3e-12	YABBY family protein