PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00090.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 247aa    MW: 27408.8 Da    PI: 6.9288
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00090.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05149171123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F ++  L  H++ H
  Zpz_sc00090.1.g00030.1.am.mk 149 FSCTYCDKKFYSSQALGGHQNAH 171
                                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.86E-6137185No hitNo description
PROSITE profilePS5015711.385149176IPR007087Zinc finger, C2H2
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MPPPPPPPPP LGVFDCIDLM RTGTRFTFFV HYRFWHCLLC EQRGLVDDRP LFWAPFTAQR  60
APPQDSDTNF HGPFIDGRLL ARFAHSTERL FSCANIAFHL RRPPAGCVLM DPNGGRGFGS  120
EADFDLDLDL NLSLQQPSLA PEPEPPGYFS CTYCDKKFYS SQALGGHQNA HKFERSVAKR  180
ARELAAARRH AAGQGGERGT ASEDEARRGK ELGIGLPDSQ ASSSQQIRSS PESRRDLADD  240
IDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00090.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687002e-52EU968700.1 Zea mays clone 323547 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7ESI41e-44A0A2T7ESI4_9POAL; Uncharacterized protein
STRINGPavir.Bb02239.1.p1e-46(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-12zinc finger protein 2