PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00091.1.g00660.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 188aa MW: 19707.2 Da PI: 10.6024

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00091.1.g00660.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.4	2.5e-34	38	130	8	89
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsss 87 ++++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c+++ s s+as s Zpz_sc00091.1.g00660.1.sm.mk 38 SKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCSSAPSTSAAS---S 115 79********************************************************8888844442222222222...1 PP TCP 88 g.............k 89 + Zpz_sc00091.1.g00660.1.sm.mk 116 FllgkrprqdvvvaH 130 122223333333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-30	37	131	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.808	38	92	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MASRDDATAT FHVYGALPAA ASTDAVTPAA KKPPSAGSKD RHSKVNGRGR RVRMPIVCAA 60 RVFQLTRELG LKSDGQTIEW LLRQAEPSIL AATGSGTTPA VFSCSSAPST SAASSFLLGK 120 RPRQDVVVAH EAAASPQPPF WAALQARPVA WGLSPAQEQQ AYASVAQGHH LNLLSVLSSA 180 TRPAEESR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00091.1.g00660.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064708	5e-96	AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence.
GenBank	AL663019	5e-96	AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBank	AP014960	5e-96	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976294.1	1e-70	transcription factor PCF1
Swissprot	Q9FTA2	1e-41	TCP21_ARATH; Transcription factor TCP21
TrEMBL	A0A0A9DEW8	7e-94	A0A0A9DEW8_ARUDO; Uncharacterized protein
STRING	Traes_2BL_4B6057E06.1	3e-76	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	2e-39	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]