PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00092.1.g00230.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 1031aa MW: 110099 Da PI: 7.9741

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00092.1.g00230.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6.3e-13	404	443	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Zpz_sc00092.1.g00230.1.am.mk 404 RRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 443 8****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.2E-17	386	450	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.23E-16	386	454	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.91E-15	391	447	No hit	No description
PROSITE profile	PS50888	14.869	393	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-14	394	448	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-10	404	443	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:2.60.40.760	2.9E-6	637	674	IPR007117	Expansin, cellulose-binding-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1031 aa Download sequence Send to blast
MPLYSCLKAT AGPLRPSSSF SSSTAYSSSH TEKEIQTPAG EHQNLENPSA WIAKPSVGAN 60 GIEASCEPIP ERLGAMNQFV PDWSNDMGDN SRPLGEDDDL IELLWCNGHV VMQSQTNRKL 120 PPRPEKPGLG PPVAAAAAAA TAAPVAQEDE AGLWFPFALA DSLDKDIFSD FFCDAPMVAP 180 VAAPATAVEA GKSPCRDVPV PPPEDGMRGA VSEAPPCDLM PPPKSTPHVS CSRQQTISLG 240 DGDHADDLSE LVRAGAAGSG RKAGTEAGAA SSSMLSAIGS SICGSNQVLV PRAVSVPDTA 300 YALPSAVGSA NANASGRCHE TTVASSSGRS NGCFGTTTTE PTSTSNRSSK RKRLDTEDSE 360 SPSEDAEWES AAAARKLPPK MATARRSRAA EVHNLSERVR VFPRRRDRIN EKMRALQELI 420 PHCNKTDKAS MLDEAIEYLK SLQLQVQMMW MGSGIAAPPV MFPGVHQYLP RMGVGMGAAA 480 AMPRMPFMAP QPVVPSPPVN PVPLSPGQMP AVGITEPYAH YLGVNHLQPT PTQHFTQGVG 540 YYPLGTKGVQ QNPAIHAPGG AAAGIKVLFV VGKMTTLERS RGQGVTVIFR LRADDALVLL 600 CADLTDPWPP PGCTAFTNKL VPRLTHTRVF SSSATLGFPL KCPFSIRLTS QSGGHLIQDD 660 VVLADWKANT LFFSFPQCPS SSVSSRIGSD CGFAFSATAA AVAAATARVS AAAATVGFSG 720 NDGAAFEYRH CCCKRAVVDV PLLETRAVIA VPHEPPSPSC SQTVIRRQQY TVQLLLTLFK 780 LQLTLCKLLL ILCKLLLKLR VLIAQRKLVW ITHCTYDYEP HPKRVVLIVD RKQSCWSPLD 840 FLLVILAKLG ESLLETLGVH RPRRPLRTCL VGRDPHMDVA EKHPALLIGT FWAATSNRQT 900 GSIWAREPLA ATDEIRKPSP AMTLRSGSGP SGELSSELIG DELVRWPKEA ENGALAEYGD 960 KTRSASGFTP KTSQGIKECA TKLGIQGARD LNGAHHGERS VWRYPAQSLV PEREGESRGS 1020 PPPRCFPCGA G

Sequence ? help Back to Top

Protein Sequence Length: 1031 aa Download sequence Send to blast

MPLYSCLKAT AGPLRPSSSF SSSTAYSSSH TEKEIQTPAG EHQNLENPSA WIAKPSVGAN  60
GIEASCEPIP ERLGAMNQFV PDWSNDMGDN SRPLGEDDDL IELLWCNGHV VMQSQTNRKL  120
PPRPEKPGLG PPVAAAAAAA TAAPVAQEDE AGLWFPFALA DSLDKDIFSD FFCDAPMVAP  180
VAAPATAVEA GKSPCRDVPV PPPEDGMRGA VSEAPPCDLM PPPKSTPHVS CSRQQTISLG  240
DGDHADDLSE LVRAGAAGSG RKAGTEAGAA SSSMLSAIGS SICGSNQVLV PRAVSVPDTA  300
YALPSAVGSA NANASGRCHE TTVASSSGRS NGCFGTTTTE PTSTSNRSSK RKRLDTEDSE  360
SPSEDAEWES AAAARKLPPK MATARRSRAA EVHNLSERVR VFPRRRDRIN EKMRALQELI  420
PHCNKTDKAS MLDEAIEYLK SLQLQVQMMW MGSGIAAPPV MFPGVHQYLP RMGVGMGAAA  480
AMPRMPFMAP QPVVPSPPVN PVPLSPGQMP AVGITEPYAH YLGVNHLQPT PTQHFTQGVG  540
YYPLGTKGVQ QNPAIHAPGG AAAGIKVLFV VGKMTTLERS RGQGVTVIFR LRADDALVLL  600
CADLTDPWPP PGCTAFTNKL VPRLTHTRVF SSSATLGFPL KCPFSIRLTS QSGGHLIQDD  660
VVLADWKANT LFFSFPQCPS SSVSSRIGSD CGFAFSATAA AVAAATARVS AAAATVGFSG  720
NDGAAFEYRH CCCKRAVVDV PLLETRAVIA VPHEPPSPSC SQTVIRRQQY TVQLLLTLFK  780
LQLTLCKLLL ILCKLLLKLR VLIAQRKLVW ITHCTYDYEP HPKRVVLIVD RKQSCWSPLD  840
FLLVILAKLG ESLLETLGVH RPRRPLRTCL VGRDPHMDVA EKHPALLIGT FWAATSNRQT  900
GSIWAREPLA ATDEIRKPSP AMTLRSGSGP SGELSSELIG DELVRWPKEA ENGALAEYGD  960
KTRSASGFTP KTSQGIKECA TKLGIQGARD LNGAHHGERS VWRYPAQSLV PEREGESRGS  1020
PPPRCFPCGA G

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00092.1.g00230.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956645	1e-118	EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3107	36	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.1	3e-27	phytochrome interacting factor 3-like 6