PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00103.1.g00040.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 440aa    MW: 49603.5 Da    PI: 5.3687
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00103.1.g00040.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.4e-06166189226
                                     -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                     k  lC ff   G+C+ G +CkF+H+
  Zpz_sc00103.1.g00040.1.am.mkhc 166 KSILCEFFKV-GQCQKGFKCKFSHD 189
                                     6779**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.81E-6164189IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4164190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831164191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4166190IPR000571Zinc finger, CCCH-type
SMARTSM003564.3234271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953234272IPR000571Zinc finger, CCCH-type
PfamPF165431.7E-15291371IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MATTTHIGTR PPASLETSSS SLPGSAFPFL QPQTQQTLYP SSPPPSFRPT IPDRVRMPPK  60
KGQPSKTELA KKQKIVEDKT FGLKNKNKSK NVQKYVQSLH QAVQPKPDPS KTAAKASESA  120
QIGPRAGCTS PHPKKKEEEK AREKELNDLF KVAVSQPKVP VGVDPKSILC EFFKVGQCQK  180
GFKCKFSHDL NVQRKGEKID IYTDKRDAET MEDWDQETLE KVVESKKTEY QQNKPTDIVC  240
KYFLDAVEKK QYGWFWVCPN GGKDCHYRHA LPPGYVLKSQ MNALLEEESE KLAIEDEIED  300
ERRKTKTSTP MTTELFMQWK RKKAEEREAG QAALRAERAK NDRMSGRELF MADASVFVDD  360
AEAYEVYERD EESEAKQETS KQNQDAGPSS STSNGKQAEE PDDDDIDIDD DLDLDELNEL  420
EASLSKTSIQ IREPGEGTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301322RRKTKTSTPMTTELFMQWKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00103.1.g00040.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646456.20.0PREDICTED: zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLJ3L5K20.0J3L5K2_ORYBR; Uncharacterized protein
STRINGOB01G45080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-162C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]