PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00104.1.g00620.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 547aa MW: 59693.9 Da PI: 8.976

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00104.1.g00620.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	214	264	1	40
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqc 40 r rW+teE+ +++da + +Wk+I + + ++t+ q+ Zpz_sc00104.1.g00620.1.am.mk 214 RERWSTEEHGRFLDALLIVERDeqiavaffrfgrDWKKIEEQVR-TKTAVQV 264 78****************99******************.**998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	21	No hit	No description
SuperFamily	SSF46689	2.69E-5	208	266	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MRIFFAGRIW PTYATCGFIA CGSGPVMWRT GRPRTETCAC CVTSSFEAVA RVVLPKLPVC 60 PNSQTTRPVR IRTQPGTHAL LSPREPADFP EPERTVAISF FPHMFFSRLT DDTSLSDATR 120 SQSHHHQPVG WRAQATSYDA ATRLRPAPHL HFNSWLNCRR SIRVRVACYI SASVLGEDGI 180 CTSATRLTMD GGGSNHETPG GKKARKPYTI TKPRERWSTE EHGRFLDALL IVERDEQIAV 240 AFFRFGRDWK KIEEQVRTKT AVQVTSSSCS ISIRAFALFG GRIPQIRSHA QKYFIKVQKL 300 GLAAGLPPQY PRRRFVMHQQ QQQGSTSTAG SSAAAVPVLQ GQPHGAPVAV PMPGPSCDGV 360 VVHGSLGWDC AGILPSTAGA PGTSAWVNTD GHGQIAPPAS LIGTPSFSDA TVDWAGSSSS 420 KPLASGDAQD EFIQLPLSPD DLNFARVYRF VGDMFDPNTV CQVDSHLQRL KGMDDITVKT 480 ILLVLRNLET NLSAPQFEPV VSSSTPLVSH PCVHPEYQSG TRQVVLPLEQ YRHFVQALGK 540 FDAAGLA

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MRIFFAGRIW PTYATCGFIA CGSGPVMWRT GRPRTETCAC CVTSSFEAVA RVVLPKLPVC  60
PNSQTTRPVR IRTQPGTHAL LSPREPADFP EPERTVAISF FPHMFFSRLT DDTSLSDATR  120
SQSHHHQPVG WRAQATSYDA ATRLRPAPHL HFNSWLNCRR SIRVRVACYI SASVLGEDGI  180
CTSATRLTMD GGGSNHETPG GKKARKPYTI TKPRERWSTE EHGRFLDALL IVERDEQIAV  240
AFFRFGRDWK KIEEQVRTKT AVQVTSSSCS ISIRAFALFG GRIPQIRSHA QKYFIKVQKL  300
GLAAGLPPQY PRRRFVMHQQ QQQGSTSTAG SSAAAVPVLQ GQPHGAPVAV PMPGPSCDGV  360
VVHGSLGWDC AGILPSTAGA PGTSAWVNTD GHGQIAPPAS LIGTPSFSDA TVDWAGSSSS  420
KPLASGDAQD EFIQLPLSPD DLNFARVYRF VGDMFDPNTV CQVDSHLQRL KGMDDITVKT  480
ILLVLRNLET NLSAPQFEPV VSSSTPLVSH PCVHPEYQSG TRQVVLPLEQ YRHFVQALGK  540
FDAAGLA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00104.1.g00620.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819438.1	1e-105	protein REVEILLE 8-like isoform X1
TrEMBL	A0A2T7DRB8	1e-110	A0A2T7DRB8_9POAL; Uncharacterized protein
STRING	ORGLA01G0032300.1	1e-94	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3642	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	3e-35	MYB_related family protein