PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00108.1.g00670.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 103aa    MW: 10701.6 Da    PI: 4.7148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00108.1.g00670.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.96.7e-1064103146
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46 
                                   s++kGV   + +grW A+I++      r  r++lg+f  +e Aa+a+
  Zpz_sc00108.1.g00670.1.am.mk  64 SRFKGVVPQP-NGRWGAQIYE------RhERVWLGTFPDEEAAARAY 103
                                   789***9788.8*********......44**********66666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-1464103No hitNo description
SuperFamilySSF541711.57E-1064103IPR016177DNA-binding domain
PfamPF008474.0E-564103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-1265103IPR001471AP2/ERF domain
SMARTSM003807.2E-565103IPR001471AP2/ERF domain
PROSITE profilePS5103215.77865103IPR001471AP2/ERF domain
PRINTSPR003679.2E-56677IPR001471AP2/ERF domain
PRINTSPR003679.2E-586102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MGVESLSSTA ADYSFSSSRS TATTESGVAQ LPVAAAPGCE ISPHDEAVTS QPSAAAAATA  60
QGSSRFKGVV PQPNGRWGAQ IYERHERVWL GTFPDEEAAA RAY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00108.1.g00670.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958126e-45FP095812.1 Phyllostachys edulis cDNA clone: bphyem125h21, full insert sequence.
GenBankFP0968356e-45FP096835.1 Phyllostachys edulis cDNA clone: bphyem207b07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191174.14e-29AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X2
RefseqXP_020200372.14e-29AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X2
RefseqXP_020201147.14e-29AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X2
SwissprotQ9AWS02e-19Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A3B6FIV44e-28A0A3B6FIV4_WHEAT; Uncharacterized protein
STRINGMLOC_7940.15e-29(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1870756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.13e-21ethylene response DNA binding factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]