PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00109.1.g00280.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 349aa    MW: 35972.1 Da    PI: 5.2248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00109.1.g00280.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13189234555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   h+++Er RR+ri +++  L+el+P+a      K +Ka++L ++++Y+k Lq
  Zpz_sc00109.1.g00280.1.am.mk 189 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDETIDYVKFLQ 234
                                   99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-18182244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-14182238No hitNo description
PROSITE profilePS5088817.803184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-17186243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10189234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-14190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MQPSVREMKG DSEGGQEDDF FNQLLSTPPT AWAELDSGKS PWELPAGASE DPAFDESALL  60
ASRLRHDQIG GDKPVMLHLR DLHGLAGVGG GEDGGNAGFL PLPLFTDRTR EDQALYNGFG  120
AAGTHGASAV QPFGQGGPMP AQSFGGGAAS AGGTATAGAP AAEATSGGGA APPRQQRVRA  180
RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDETIDYV KFLQIQVKVL  240
SMSRLGGASA VAPLVVNISL RLTEQQVAKL MEEDTGSAMQ YLQGKGLCLM PISLASVISS  300
ATSSSLPTGG AGGPQRDSGS PATTSPPLAN GASGGDSRTV RDAGSSEKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00109.1.g00280.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697794e-58EU969779.1 Zea mays clone 335593 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809006.11e-131transcription factor bHLH82-like
SwissprotQ9ZUG91e-69BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2S3GUI21e-129A0A2S3GUI2_9POAL; Uncharacterized protein
TrEMBLA0A2T7FD951e-129A0A2T7FD95_9POAL; Uncharacterized protein
STRINGPavir.Ab03158.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-41LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]