PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00117.1.g00320.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 327aa MW: 35795.4 Da PI: 9.3956

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00117.1.g00320.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	94.8	5.8e-30	87	198	1	98
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 f+kv tpsdv+k++rlv+pk++ae++ +++ ++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk Zpz_sc00117.1.g00320.1.am.mk 87 FEKVVTPSDVGKLNRLVIPKQHAERYfpalgsaaseaASNEGKGLVLSFEDREGKAWRFRYSYWNSSQSYVMTKGWSRFVK 167 99*****************************999988888999******************************** PP HHT--TT-EEEEEE-.SS..SEE..EEEEE- CS B3 71 angLkegDfvvFkld.gr..sefelvvkvfr 98 +++L +gD+v F + g+ ++++++ ++r Zpz_sc00117.1.g00320.1.am.mk 168 EKRLGAGDTVAFARGtGDaaARGRFFIDFCR 198 **********9443332455666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.8E-38	83	184	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-29	84	182	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.36E-27	85	179	No hit	No description
SMART	SM01019	8.4E-22	87	200	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.9E-28	87	199	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.17	87	200	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MLASVGTQLL NDRSQSRSCS HPPSVEEGEE IPIVKVNSYS TQLEQQLESR GVERVPMEFG 60 RIAAAQEDSE RARGGGGVAW LEREHMFEKV VTPSDVGKLN RLVIPKQHAE RYFPALGSAA 120 SEAASNEGKG LVLSFEDREG KAWRFRYSYW NSSQSYVMTK GWSRFVKEKR LGAGDTVAFA 180 RGTGDAAARG RFFIDFCRRR QDVAFLQPSA LQRLPLPSVP ISCPWPQEYG AYNPAAAPNR 240 HVLFLRPQMP SAVVLTSVPV RVAASAVEAT RSKRVRLFGV NLDSPPVMED NSRATGTVST 300 FLQLPSPSSS TSSSTAGKDL CSLDLGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	5e-53	82	199	3	113	B3 domain-containing transcription factor NGA1
5os9_B	5e-53	82	199	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00117.1.g00320.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983810.1	1e-123	putative B3 domain-containing protein Os10g0537100
Swissprot	Q8LNN8	5e-93	Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBL	A0A1E5V5B2	1e-127	A0A1E5V5B2_9POAL; Putative B3 domain-containing protein
STRING	Si039972m	1e-122	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61970.1	2e-50	B3 family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]