PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00124.1.g00380.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 316aa    MW: 34607.3 Da    PI: 4.5643
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00124.1.g00380.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11153195754
                                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Zpz_sc00124.1.g00380.1.sm.mk 153 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 195
                                   79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.31E-5139200No hitNo description
PROSITE profilePS5088815.269146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16150217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9153195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15153212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.62E-5246284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MELDEQAFLE EILSLRRDAW ECNAVGDFFS PATAAMDCSF QERHQPPPNV SVLPTFTASY  60
DHQQPPPAPG FDCLSEVYGA AAAFGGPNEG DYGGEMGFLD VIEPKAPLVE GAGLGVCKVE  120
PGLQVDSGGA FSAPAAPVSK KKRVEGMPSK NLMAERRRRK RLNDRLSMLR SVVPKISKMD  180
RTSILGDTID YMKELLERIK QLQEEIEQEQ HEAPGVLSVF QELNPNEMVA RNTPKFEVER  240
KEGGETRVEI YCAAKPGLLL STVSTLDTLG LDIQQAVVSC FNDFGMHASC SEREMISADI  300
IKQELFKNAG YGGGCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140160KKRVEGMPSKNLMAERRRRKR
2154161ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00124.1.g00380.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142220.11e-169uncharacterized LOC100274388
SwissprotQ9LSL12e-67BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A3L6S1271e-174A0A3L6S127_PANMI; Transcription factor bHLH93-like isoform X2
STRINGSb10g030470.11e-165(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-49beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]