PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00127.1.g00260.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 574aa MW: 62256 Da PI: 11.3961

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00127.1.g00260.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.1e-05	386	409	3	26
HHHHHHHHHHHHHHHHHHHHHHCT CS HLH 3 rahnerErrRRdriNsafeeLrel 26 r+h e+E+rRR+ri+s +++Lr + Zpz_sc00127.1.g00260.1.am.mk 386 RNHREAEKRRRERIKSHLDRLRNI 409 78********************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.0E-7	386	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MPAKPKRFVK ATPLVQRAIV TSPGDRWEKG SRDALASRIM VITAFRLRLI FRAPFLENCS 60 RNNFPRKVLL TISGSSWKDR SRSVIHNVMC GRARFCAASA SPPRLRSHRN RKNKKPPAGR 120 DGGRRPSRFV ASGAAERPPA RFNSGMAGRS GPVAARKLET GNFAHDVMEM GLQGKVRLTK 180 WYTPYQQKQR AKAQQESTKK KSQSIQRCLL YCIFSDGDPA SGRHQVGTIP AVQPLQRTAG 240 TRCDRRVPSC QDSFSLYVPL SPVTSQHVRG PPLADRQQEG CNSPYPRNNT PQQLTPSPPP 300 PPPLPLRRSC RARPSSRMFP ADVSALPLPG AARQGEGGVV PLLPPFFMGS IWQAGAGGSA 360 SASEEDEAAA AAAAAAAHDR ALAASRNHRE AEKRRRERIK SHLDRLRNID KASLLAKAVE 420 RVRDLKQRVA GVGEAAPAHL FPTEHDEIVV LASGAVFEAS VCCDDRSDLL PELIETLHAL 480 RLRTLRAEMA TLGGRVRNVL VLARDTTGRD IHGDGGVVTG DDGRSDLAAA GSINGNGGEF 540 LKEALRALVE RPGAGAGDRP KRRRVSDGNM QAAA

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MPAKPKRFVK ATPLVQRAIV TSPGDRWEKG SRDALASRIM VITAFRLRLI FRAPFLENCS  60
RNNFPRKVLL TISGSSWKDR SRSVIHNVMC GRARFCAASA SPPRLRSHRN RKNKKPPAGR  120
DGGRRPSRFV ASGAAERPPA RFNSGMAGRS GPVAARKLET GNFAHDVMEM GLQGKVRLTK  180
WYTPYQQKQR AKAQQESTKK KSQSIQRCLL YCIFSDGDPA SGRHQVGTIP AVQPLQRTAG  240
TRCDRRVPSC QDSFSLYVPL SPVTSQHVRG PPLADRQQEG CNSPYPRNNT PQQLTPSPPP  300
PPPLPLRRSC RARPSSRMFP ADVSALPLPG AARQGEGGVV PLLPPFFMGS IWQAGAGGSA  360
SASEEDEAAA AAAAAAAHDR ALAASRNHRE AEKRRRERIK SHLDRLRNID KASLLAKAVE  420
RVRDLKQRVA GVGEAAPAHL FPTEHDEIVV LASGAVFEAS VCCDDRSDLL PELIETLHAL  480
RLRTLRAEMA TLGGRVRNVL VLARDTTGRD IHGDGGVVTG DDGRSDLAAA GSINGNGGEF  540
LKEALRALVE RPGAGAGDRP KRRRVSDGNM QAAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	560	564	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00127.1.g00260.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727966	4e-96	KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9578	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	1e-25	bHLH family protein