PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00134.1.g00210.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 390aa    MW: 41534.2 Da    PI: 10.7159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00134.1.g00210.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.43.9e-06349374630
                                     HHHHHHHHHHHHHHHHHHHCTSCC.C CS
                             HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                                     +++Er RR ri +++ +L+el+P+ +
  Zpz_sc00134.1.g00210.1.sm.mkhc 349 SIAERERRTRISEKLRKLQELVPNmD 374
                                     689********************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.559343390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-6346378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-4347380No hitNo description
Gene3DG3DSA:4.10.280.102.9E-5348377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MPASCPLQRG TSDPTSLVEP GGPSLSFAPS PARLGSFKPT TTPRSSHLRQ HPPAPPPNLP  60
CFYASRAHQQ PKLTSSRPGA HRARLPGRRL VNFTPAQRPE GAVGMRRFMP GSGGVEPSSS  120
PSSGGQQRHH QHGERGGDTA AAGGLRYGGG DISLGHGHDG RLPQLGVDSA GRNEDRQQDG  180
SMDMLARHSS SPAGFFSNLV MDNGYPSSRG AGGSGAEPHH HPSKASNVNS RKMNFTRQQQ  240
QGAASGHLSQ ISELDGGAFP PGLSAGSRSS GESSGAASRS FSGGFSIVGP WEESREIIAT  300
LGAYDPQFSG AMAGSALEMA GMDRYLQLQQ DQVPFKVRAK RGCATHPRSI AERERRTRIS  360
EKLRKLQELV PNMDKTLKHE QEKCTCCRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00134.1.g00210.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547251e-107EU954725.1 Zea mays clone 1479278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808991.11e-107transcription factor bHLH128-like
TrEMBLA0A1E5USQ61e-108A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRINGPavir.Aa01423.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-27bHLH family protein