PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00139.1.g00270.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 210aa    MW: 22473.6 Da    PI: 5.6112
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00139.1.g00270.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.3e-1685129250
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                                    y+GVr++  +g Wv+eIr+p++   + r++l ++ tae+Aa+a++aa+
  Zpz_sc00139.1.g00270.1.am.mk  85 SYHGVRRRD-WGMWVSEIREPRK---KSRIWLRTYPTAEMAARAHDAAA 129
                                   79****988.**********843...6********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1084129IPR001471AP2/ERF domain
SMARTSM003802.9E-1685149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-2285130IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1485131IPR016177DNA-binding domain
PROSITE profilePS5103217.70185129IPR001471AP2/ERF domain
PRINTSPR003671.4E-78697IPR001471AP2/ERF domain
PRINTSPR003671.4E-7108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEIAGELRAP ITPSSSSSSS NSSSSCAIDT TVTQVLPNAK HDSKTSKRSR RSDSPPAPGS  60
SSGRRQPEHD AAGRRITGCA GRHPSYHGVR RRDWGMWVSE IREPRKKSRI WLRTYPTAEM  120
AARAHDAAAT VSVSLSPAAS GGEAAAGDSE ENAAAFFECL PDLLLDLRDG LMWSADVWAD  180
DAASSVAEEC NDGGDDVFGG VHLWADQFWT
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00139.1.g00270.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076627e-40AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0050067e-40AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149587e-40AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3452327e-40AY345232.1 Oryza sativa transcription factor Rap212 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4850123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-16ERF family protein