PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00148.1.g00410.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 368aa    MW: 38963.7 Da    PI: 9.5997
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00148.1.g00410.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind81.41.4e-25103162261
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 
                                     Fl+k+ye+++d+++++++sw    nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+Yg
  Zpz_sc00148.1.g00410.1.am.mkhc 103 FLMKTYEMVDDPATDDVVSWGPGDNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYG 162
                                     9********************999***********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-2798162IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-3199246IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-24101162IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-21103162IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-15103126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-15141153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-15154166IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
GGGAACSSPR SQGDRTRIAG DPFLRAPPNP GRDPRPWPRR GRERAYGSRA EEMEGGVAAA  60
AAAAAAASTV TTAVAPPVAP APAATHAAVA NGGGAPAAPP PPFLMKTYEM VDDPATDDVV  120
SWGPGDNSFV VWNTPEFARD LLPKYFKHSN FSSFVRQLNT YGRFDGDKAT AATTLAVPAA  180
GDLSFKASAT EANGPSLSGL TLTLTLEKPG AFLVDVKPHN KDVRFQFMNS ALVYDKRLSL  240
TYTHSTSLAT DAAPPSRTAL DCALAVDSAN KVSLSHTLGS GGCRVKYTYA HGIDRLTTFE  300
PVFDTKANAW EFAVTKKFQG GDAVKGTYHA SNKLLGLEWT KDSKAGASFK GPRGDERQVN  360
RFRWFLPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A8e-19101162869Heat shock factor protein 1
5hdn_A8e-19101162869Heat shock factor protein 1
5hdn_B8e-19101162869Heat shock factor protein 1
5hdn_C8e-19101162869Heat shock factor protein 1
5hdn_D8e-19101162869Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHigh-conductance voltage-dependent solute channel with a slight selectivity for cations transporting triosephosphates, dicarboxylic acids, ATP, inorganic phosphate (Pi), sugars, and positively or negatively charged amino acids. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00148.1.g00410.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793495.11e-101outer envelope pore protein 24, chloroplastic-like
SwissprotB8ANR35e-85OEP24_ORYSI; Outer envelope pore protein 24, chloroplastic
TrEMBLA0A2T7BY321e-101A0A2T7BY32_9POAL; Uncharacterized protein
STRINGPavir.Ib04468.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP669022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.13e-29heat shock transcription factor A1E