PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00148.1.g00420.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 118aa    MW: 13049.2 Da    PI: 5.7034
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00148.1.g00420.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.68.8e-111055345
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                   W+  E e++ +a + +G++   +W +Ia+ +g g+t+ ++k ++ 
  Zpz_sc00148.1.g00420.1.sm.mk 10 TWSWSENERFENALATYGSDtpdRWQRIAAVVGGGKTADDVKRHYE 55
                                  7*******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.795358IPR017877Myb-like domain
SMARTSM007172.5E-8760IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-10957IPR009057Homeodomain-like
PfamPF002493.3E-9955IPR001005SANT/Myb domain
CDDcd001671.14E-61057No hitNo description
Gene3DG3DSA:1.10.10.608.4E-51056IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MSASSRTTTT WSWSENERFE NALATYGSDT PDRWQRIAAV VGGGKTADDV KRHYEELELD  60
IGGITEKGRR RKGRHAGGDG NSNGEIILRL AIARIAEPTT SSDPRHEDDA WTNFKGSE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00148.1.g00420.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797915.11e-19protein RADIALIS-like 3
TrEMBLA0A3L6SDU91e-20A0A3L6SDU9_PANMI; Protein RADIALIS-like 3
TrEMBLA0A3L6TPY88e-21A0A3L6TPY8_PANMI; Protein RADIALIS-like 3
STRINGOPUNC03G38540.12e-20(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-16RAD-like 1