PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00148.1.g00510.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 551aa    MW: 63316.7 Da    PI: 5.132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00148.1.g00510.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.00066108154848
                                     HHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHH CS
                             HLH   8 rErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAv 48 
                                      Er +++++N  + +L+++lP+ +      +++s+  + + +Le A 
  Zpz_sc00148.1.g00510.1.sm.mkhc 108 QERLYVNKLNIILVQLQTILPPETipdayaNGSSEEQNHMRVLEVAA 154
                                     7*********************7779999877777788888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF483712.06E-3921497IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.102.7E-4727191IPR011989Armadillo-like helical
SMARTSM009138.4E-1136102IPR001494Importin-beta, N-terminal domain
PROSITE profilePS5016615.25336102IPR001494Importin-beta, N-terminal domain
PfamPF038103.3E-153697IPR001494Importin-beta, N-terminal domain
Gene3DG3DSA:1.25.10.102.7E-47226467IPR011989Armadillo-like helical
SMARTSM011023.1E-27373511IPR014877CRM1 C-terminal domain
PfamPF087672.3E-28384469IPR014877CRM1 C-terminal domain
PfamPF087674.1E-9472507IPR014877CRM1 C-terminal domain
Gene3DG3DSA:1.25.10.103.8E-9473507IPR011989Armadillo-like helical
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0009408Biological Processresponse to heat
GO:0009553Biological Processembryo sac development
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0009860Biological Processpollen tube growth
GO:0005829Cellular Componentcytosol
GO:0008536Molecular FunctionRan GTPase binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MADKLRDLSQ PIDVPLLDAT VAAFYGTGSK EERNAADQIL RDLQNNPDMW LQVVHILQNS  60
QNLNTKFFAL QVLESVIKYR WNALPVEQRD GIKNYISDLS SNEVSFRQER LYVNKLNIIL  120
VQLQTILPPE TIPDAYANGS SEEQNHMRVL EVAAENRTAL LMGLEYLIGI SYVDDTEVCL  180
DYWNVFVLEL FEAHNQIESA AAVNMMGLQG QMVPGIVDGT GTAVQQRRQL YSSSLSKLRM  240
LMICRMAKPE EVLIVEDENG NIVRETMKDN DVLVQYKYPR FLRAHWKFLK TVVNKLFEFM  300
HEMHPGVQDM ACDTFLKIVQ KCKRKFVTQQ VGHMIQAESD NAKRDEYLKR LMSLPNQTNT  360
SVASSLGPHF FPQISLIFLD MLTVYRSVKR ETLKLIETFV DKAEDLPHMG KQFVPPMMDP  420
VLGDYARNVP DARESEVLSL YATIINKYKS EMLEDVPRIF EAVFQCTLEA SGFRNQFYKT  480
YFLTIEQEIF AVLTDTFHKP GFKLHSKEFS AQDNKDLYAE EAAAQRERER QRMLAIPGLI  540
APSELQDEMM G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gjx_A3e-54246815833Exportin-1
3gjx_D3e-54246815833Exportin-1
3nby_A3e-54246815833Exportin-1
3nby_D3e-54246815833Exportin-1
3nbz_A3e-54246815833Exportin-1
3nbz_D3e-54246815833Exportin-1
3nc0_A3e-54246815833Exportin-1
3nc0_D3e-54246815833Exportin-1
3nc1_A3e-54246815833Exportin-1
4bsm_A3e-54246813831EXPORTIN-1
4bsn_A3e-54246813831EXPORTIN-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtReceptor for the leucine-rich nuclear export signal (NES). Binds cooperatively to the NES on its target protein and to the small GTPase Ran in its active GTP-bound form (PubMed:10652141, PubMed:16766674). Required for the maternal-to-embryonic transition and during gametophyte development (PubMed:18791220). Involved in heat-induced oxidative stress basal resistance (PubMed:20345641). {ECO:0000269|PubMed:10652141, ECO:0000269|PubMed:16766674, ECO:0000269|PubMed:18791220, ECO:0000269|PubMed:20345641}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00148.1.g00510.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1007451e-86AK100745.1 Oryza sativa Japonica Group cDNA clone:J023118H18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022744978.11e-149protein EXPORTIN 1A-like isoform X8
SwissprotQ9SMV61e-93XPO1A_ARATH; Protein EXPORTIN 1A
TrEMBLA0A0E0LJM71e-145A0A0E0LJM7_ORYPU; Uncharacterized protein
STRINGOPUNC07G10280.21e-145(Oryza punctata)
Publications ? help Back to Top
  1. Haasen D,Köhler C,Neuhaus G,Merkle T
    Nuclear export of proteins in plants: AtXPO1 is the export receptor for leucine-rich nuclear export signals in Arabidopsis thaliana.
    Plant J., 1999. 20(6): p. 695-705
    [PMID:10652141]
  2. Merkle T
    Nucleo-cytoplasmic partitioning of proteins in plants: implications for the regulation of environmental and developmental signalling.
    Curr. Genet., 2003. 44(5): p. 231-60
    [PMID:14523572]
  3. Blanvillain R,Boavida LC,McCormick S,Ow DW
    Exportin1 genes are essential for development and function of the gametophytes in Arabidopsis thaliana.
    Genetics, 2008. 180(3): p. 1493-500
    [PMID:18791220]
  4. Wu SJ,Wang LC,Yeh CH,Lu CA,Wu SJ
    Isolation and characterization of the Arabidopsis heat-intolerant 2 (hit2) mutant reveal the essential role of the nuclear export receptor EXPORTIN1A (XPO1A) in plant heat tolerance.
    New Phytol., 2010. 186(4): p. 833-42
    [PMID:20345641]
  5. Stankovic N, et al.
    Dynamic Distribution and Interaction of the Arabidopsis SRSF1 Subfamily Splicing Factors.
    Plant Physiol., 2016. 170(2): p. 1000-13
    [PMID:26697894]