PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00155.1.g00360.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 250aa MW: 27950.1 Da PI: 8.7937

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00155.1.g00360.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.4e-19	28	85	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++p+ ++r++L +++ +++ +q+kvWFqNrR ++k+ Zpz_sc00155.1.g00360.1.am.mkhc 28 YVRYTPEQVEALERVYAECPKPTSARRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85 6789***************************************************996 PP
2	START	71.4	2.3e-23	129	249	2	120
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakae 80 +aee+++e+v+ka+ ++ Wv+++ +++g+++ +++ s++++g a+ra+g+v ++++ +e+l d++ W ++++++e Zpz_sc00155.1.g00360.1.am.mkhc 129 IAEETLTEFVSKATGTAIDWVQMPGMKPGPDSFGIVSVSHGCRGVAARACGLVNLEPTKILEILKDRP-SWFRDCRSQE 206 789*****************************************************9998888888.****** PP EEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TT CS START 81 tlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlga 120 + + g g+++l ++++ a++++v+ Rdf+++Ry+ ++++ Zpz_sc00155.1.g00360.1.am.mkhc 207 IFTMLPAGngGTIELVYMQMFAPTTVVSaRDFWTLRYTATMED 249 **9999************999******988665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-20	7	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.564	22	86	IPR001356	Homeobox domain
SMART	SM00389	1.7E-16	24	90	IPR001356	Homeobox domain
CDD	cd00086	2.12E-16	27	87	No hit	No description
SuperFamily	SSF46689	3.21E-17	27	88	IPR009057	Homeodomain-like
Pfam	PF00046	6.9E-17	28	85	IPR001356	Homeobox domain
CDD	cd14686	8.11E-5	79	118	No hit	No description
PROSITE profile	PS50848	13.111	119	250	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	4.1E-9	127	250	IPR023393	START-like domain
SuperFamily	SSF55961	2.33E-17	127	250	No hit	No description
Pfam	PF01852	2.8E-20	129	249	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MAAAVAMRSG SNDGGGGYDK GGMDTGKYVR YTPEQVEALE RVYAECPKPT SARRQQLLRE 60 CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLS AMNKLLLEEN ERLQKQVSQL 120 VHENALLSIA EETLTEFVSK ATGTAIDWVQ MPGMKPGPDS FGIVSVSHGC RGVAARACGL 180 VNLEPTKILE ILKDRPSWFR DCRSQEIFTM LPAGNGGTIE LVYMQMFAPT TVVSARDFWT 240 LRYTATMEDG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00155.1.g00360.1.am.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269\|PubMed:17804793}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632709.1	1e-155	homeobox-leucine zipper protein HOX10
Swissprot	Q6TAQ6	1e-156	HOX10_ORYSJ; Homeobox-leucine zipper protein HOX10
TrEMBL	A0A1D6JKR7	1e-157	A0A1D6JKR7_MAIZE; Rolled leaf2
STRING	OS03T0109400-02	1e-154	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP374	38	197

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60690.1	1e-131	HD-ZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825]