PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00164.1.g00610.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 392aa    MW: 41886.3 Da    PI: 6.7894
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00164.1.g00610.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.12.2e-361002001101
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   aCaaCk+ r +C+++C+la+yfpaeq++ f  vh+lFG++++l++l+++p+e+ ++am+++++eAeara+dPv+G+vg+i+
  Zpz_sc00164.1.g00610.1.am.mk 100 ACAACKYRRARCTPECPLARYFPAEQNHLFVSVHRLFGVDKILRTLREVPPEDAPEAMRTMIFEAEARASDPVSGCVGIIR 180
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkeel 101
                                   ++q++++ ++ el +l++++
  Zpz_sc00164.1.g00610.1.am.mk 181 QYQHEVSVANDELMALRHKI 200
                                   *************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.06599200IPR004883Lateral organ boundaries, LOB
PfamPF031957.5E-35100197IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAQDSEPWKE DPIELALYSR HNFSRRAGDA TREERGCLQR RRSRRPRLRR PPCTMSSSSN  60
PPPDHTDGSD ASHVGSASSS PPPSGAAGSS ERRQNYARSA CAACKYRRAR CTPECPLARY  120
FPAEQNHLFV SVHRLFGVDK ILRTLREVPP EDAPEAMRTM IFEAEARASD PVSGCVGIIR  180
QYQHEVSVAN DELMALRHKI ATCRSRADGG LPLADPAIPA VPEQDNVRTR DALDGGGAAQ  240
EPAHNRQPAA GGLPLAYPAT RAAPEQNNVR TTDALDSGGA AQEPVHGRQP AAGGLPLADP  300
AIPAAPEQDN AMTTDAFDGG GAAQAQAQEP DHQAGAGVAV VDDQQQHHNA HKAPDLEVTT  360
AEHQYTTPVM AASSSRKGRK VAAPVVKHDA DP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2310122012131LOB family transfactor Ramosa2.1
5ly0_B4e-2310122012131LOB family transfactor Ramosa2.1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13844QRRRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00164.1.g00610.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6486622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.14e-22LOB domain-containing protein 27