PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00165.1.g00450.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

BBR-BPC

Protein Properties

Length: 247aa MW: 27208.2 Da PI: 10.4124

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00165.1.g00450.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	299.4	1.3e-91	52	247	113	301
GAGA_bind 113 qlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.... 186 + + ql+d +++ +re++++ea+pi++a+ ++ + kk++k++++ +p+++ + +k++++++k+ +sa e+ Zpz_sc00165.1.g00450.1.sm.mkhc 52 KAMHMQLADAPYDhAREMHISEAYPISTAPGSVGKGKKPRKNHSQPSPLKRPSGVLRKTKKTNWKNGGLSSAGEDsara 130 34679******9***********************************98888777888887766665334678 PP GAGA_bind 187 ..skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqg 263 sk+e+k++dl+ln+vs+Dest+P+P+CsCtG+lrqCYkWGnGGWqS+CCt++iS+yPLP++++rr+aR++grKmS+g Zpz_sc00165.1.g00450.1.sm.mkhc 131 svSKNEWKDQDLGLNQVSYDESTMPAPACSCTGKLRQCYKWGNGGWQSSCCTMSISMYPLPAMPNRRHARMGGRKMSGG 209 889************************************************************************ PP GAGA_bind 264 afkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 af+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir Zpz_sc00165.1.g00450.1.sm.mkhc 210 AFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 247 ***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.0E-106	35	247	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.2E-82	52	247	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MRFLGGGVAV VLPVVAFMLV IPSGLISWVQ ADVIMDNFGH RENGRQRPDQ YKAMHMQLAD 60 APYDHAREMH ISEAYPISTA PGSVGKGKKP RKNHSQPSPL KRPSGVLRKT KKTNWKNGGL 120 SSAGEDSARA SVSKNEWKDQ DLGLNQVSYD ESTMPAPACS CTGKLRQCYK WGNGGWQSSC 180 CTMSISMYPL PAMPNRRHAR MGGRKMSGGA FTKLLSRLAA EGHDLSTPVD LKDHWAKHGT 240 NRYITIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00165.1.g00450.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964426.1	1e-126	barley B recombinant-like protein D
Refseq	XP_004964427.1	1e-126	barley B recombinant-like protein D
Swissprot	Q5VSA8	1e-124	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	K3XYG4	1e-126	K3XYG4_SETIT; Uncharacterized protein
STRING	Si006972m	1e-126	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6226	37	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.3	1e-71	basic pentacysteine 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]