PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00166.1.g00480.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 871aa MW: 92725.7 Da PI: 9.1017

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00166.1.g00480.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	6e-06	383	405	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F+r nL+ H r H Zpz_sc00166.1.g00480.1.am.mk 383 FVCEVCNRGFPREQNLQLHRRGH 405 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.07E-6	382	405	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-4	382	405	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.741	383	405	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0029	383	405	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	385	405	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.07E-6	454	479	No hit	No description
SMART	SM00355	230	459	479	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MHPLASHSGR FTAMSAAKTR VEARDPVLPR DVTRSEHQNI QPRPVTSRQC TTGSDAGAAK 60 HDRPHHCQPT VHTNPSDPQL AVPGRPTRVH RGGAHRIFFF RDPRGPRDLL LHLPGHCLRL 120 SLSLSLSPSS AGADAAHILG ERQAALTRES QPLPLRLFLP PGDTLDSEEA EEVGEGEGNK 180 EVGLARLIPS SSGGAVSPDS IPSHGASILP VTSIIICLLF LVVRAISRRL LLRPAWRGTG 240 RVSSVATLLL FPLSAFTRFD FVSAVGRAPP RVCVRACVDR ISQKTPGARR RVGAQCTPCR 300 HLLSVTPDRL VRGFLWARRH ADAATGGGVF PAAAKLRGCR SCRGTKEEEE EPAGQSKQVF 360 FTSNPDAEVI ALSPSTLLAT NRFVCEVCNR GFPREQNLQL HRRGHNLPWR LKQKNPKEAR 420 RKVYLCPEPT CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCNKLYGV QSDWKAHSKT 480 CGTREYRCDC GKLFSRYPCL DSPFSIDPAN FLAIITIIFF LFFTASESTL GIPTGSREDI 540 ALPASARPHA SFLKDSFITH RAFCDALARE SAQITPLGTG LYVGSGGMAL GVSGGAPQMS 600 AVFGTQAQPS AAAAAQLDHI MASFSSPSLF VSQASASSSS FFLGDGGGPP PSQQDFSEDG 660 DCSQGSQSSH LPHGKTPAGF HGLMQLPEQN QQGSKASGNL LNFGFFSNNS GGAAAGQDAR 720 LVIQDQFNGN TEQRSMTASV GNHLSGNFSF LYNSPGSASA SDLPQNSATA LLLKAAQMGS 780 TTSSNPNCTS ALLRAAGFGG NAQQGNSAAG EGSAADETHF HDLIMNSLAS GSGGTGLDDG 840 KLSTRDFLGV GRGSMAPIGV HMGALDPAQM K

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MHPLASHSGR FTAMSAAKTR VEARDPVLPR DVTRSEHQNI QPRPVTSRQC TTGSDAGAAK  60
HDRPHHCQPT VHTNPSDPQL AVPGRPTRVH RGGAHRIFFF RDPRGPRDLL LHLPGHCLRL  120
SLSLSLSPSS AGADAAHILG ERQAALTRES QPLPLRLFLP PGDTLDSEEA EEVGEGEGNK  180
EVGLARLIPS SSGGAVSPDS IPSHGASILP VTSIIICLLF LVVRAISRRL LLRPAWRGTG  240
RVSSVATLLL FPLSAFTRFD FVSAVGRAPP RVCVRACVDR ISQKTPGARR RVGAQCTPCR  300
HLLSVTPDRL VRGFLWARRH ADAATGGGVF PAAAKLRGCR SCRGTKEEEE EPAGQSKQVF  360
FTSNPDAEVI ALSPSTLLAT NRFVCEVCNR GFPREQNLQL HRRGHNLPWR LKQKNPKEAR  420
RKVYLCPEPT CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCNKLYGV QSDWKAHSKT  480
CGTREYRCDC GKLFSRYPCL DSPFSIDPAN FLAIITIIFF LFFTASESTL GIPTGSREDI  540
ALPASARPHA SFLKDSFITH RAFCDALARE SAQITPLGTG LYVGSGGMAL GVSGGAPQMS  600
AVFGTQAQPS AAAAAQLDHI MASFSSPSLF VSQASASSSS FFLGDGGGPP PSQQDFSEDG  660
DCSQGSQSSH LPHGKTPAGF HGLMQLPEQN QQGSKASGNL LNFGFFSNNS GGAAAGQDAR  720
LVIQDQFNGN TEQRSMTASV GNHLSGNFSF LYNSPGSASA SDLPQNSATA LLLKAAQMGS  780
TTSSNPNCTS ALLRAAGFGG NAQQGNSAAG EGSAADETHF HDLIMNSLAS GSGGTGLDDG  840
KLSTRDFLGV GRGSMAPIGV HMGALDPAQM K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-20	455	496	3	44	Zinc finger protein JACKDAW
5b3h_F	5e-20	455	496	3	44	Zinc finger protein JACKDAW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00166.1.g00480.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY754865	1e-150	AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957598.1	1e-159	protein indeterminate-domain 5, chloroplastic
Refseq	XP_004957599.1	1e-159	protein indeterminate-domain 5, chloroplastic
Refseq	XP_004957600.1	1e-159	protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A3L6T3W6	1e-159	A0A3L6T3W6_PANMI; Protein indeterminate-domain 5, chloroplastic-like
STRING	Si029540m	1e-158	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24679	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	6e-81	indeterminate(ID)-domain 4