PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00167.1.g00390.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 261aa    MW: 28846.3 Da    PI: 4.6567
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00167.1.g00390.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004205224120
                                   EEETTTTEEESSHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                   y+C +C+k+F++ ++   H+
  Zpz_sc00167.1.g00390.1.sm.mk 205 YTCDHCNKRFKSIESIYGHM 224
                                   9**********988877777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.93E-5203231No hitNo description
PROSITE profilePS501579.681205232IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEPQNYDLAT IIVYPKPWTK TVLSSQSLIL QTNSPKQGSD GELFVNRVAS SGVVLKFMVG  60
KNEALPSPPN DLSHELAFSK KLEAGGPLEK IEARCTKSVS VQSEIRNEES GENNIIPLVD  120
STMGTSNPDE ISRVEMMSNT SKEGEIMVSS KSVAMDTCMA GMDETHSSQN AKICTTEKVT  180
DEICYKGNHE VSASEKSIIC PSEEYTCDHC NKRFKSIESI YGHMGGHRRD EYSLIRTTIE  240
QPGATETTNS KLEYEEVQEF V
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00167.1.g00390.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-