PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00169.1.g00410.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 205aa    MW: 22263.4 Da    PI: 4.5754
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00169.1.g00410.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.4e-09741022755
                           AP2  27 krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +++r++lg++ tae+Aa+a+++a++ + g
  Zpz_sc00169.1.g00410.1.am.mk  74 RKTRIWLGTYATAEDAARAYDEAARLMSG 102
                                   369*********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.3443110IPR001471AP2/ERF domain
SMARTSM003806.3E-1459116IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1268111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-1874111IPR001471AP2/ERF domain
PfamPF008473.7E-574100IPR001471AP2/ERF domain
CDDcd000181.40E-1475112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MQQGRVDTQP AHLADTYAPD LETADRRHAE AAEVQGSEAE ALGLLGLRDP PPAPVNFSSF  60
RGPAFLTWHA CLPRKTRIWL GTYATAEDAA RAYDEAARLM SGPAARTNFP ATATGVLSPA  120
MRAKLEKYCT ESSTTPQQDE AIANASGTAE RGARQKGDDD AKENKDDRDE DHIDEMISEL  180
TYYGPFEIHQ HPSTTTTTAT TSPLD
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00169.1.g00410.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064467e-37AL606446.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16, complete sequence.
GenBankAL6066857e-37AL606685.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence.
GenBankAP0149607e-37AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126127e-37CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551367e-37CR855136.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147J19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680905.11e-39ethylene-responsive transcription factor ERF003
SwissprotQ94AW56e-22ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLK3ZCS33e-38K3ZCS3_SETIT; Uncharacterized protein
STRINGSi024352m5e-39(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-07ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]