PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00171.1.g00670.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 137aa MW: 15664.9 Da PI: 9.8103

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00171.1.g00670.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.7	3.6e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrng lKKA E+SvLCdaev v+ifss gkly+++s Zpz_sc00171.1.g00670.1.sm.mk 9 KRIENSTNRQVTFSKRRNGFLKKAREISVLCDAEVGVVIFSSAGKLYDFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.0E-41	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.969	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.29E-33	2	81	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.32E-44	2	76	No hit	No description
PRINTS	PR00404	1.8E-30	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-30	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGFLK KAREISVLCD AEVGVVIFSS AGKLYDFCSP 60 KTSLSRILEK YQTNSGKNKM LEDENKLLAF KLHQQDIALS GSMRDLELGY HADRDFEAQM 120 PITFRVQPSH PNLQENN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	5e-20	1	71	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	5e-20	1	71	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	5e-20	1	71	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	5e-20	1	71	1	69	Myocyte-specific enhancer factor 2B
6c9l_A	5e-20	1	71	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	5e-20	1	71	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	5e-20	1	71	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	5e-20	1	71	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	5e-20	1	71	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	5e-20	1	71	1	69	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269\|PubMed:14704206}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00171.1.g00670.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ292959	5e-86	AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene).
GenBank	BT064849	5e-86	BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970811.1	2e-47	MADS-box transcription factor 2
Refseq	XP_025816957.1	2e-47	MADS-box transcription factor 2
Swissprot	Q40702	8e-48	MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBL	A0A1E5V0L9	6e-79	A0A1E5V0L9_9POAL; MADS-box transcription factor 2
STRING	Pavir.Ea03625.1.p	5e-47	(Panicum virgatum)
STRING	Pavir.J19259.1.p	5e-47	(Panicum virgatum)
STRING	Si002929m	6e-47	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3434	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	1e-33	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]