PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00180.1.g00430.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 214aa    MW: 23668.2 Da    PI: 10.2406
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00180.1.g00430.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.91.1e-5679173195
                           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedy 79 
                                     vreqdrflPian+srimkk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfe+y
  Zpz_sc00180.1.g00430.1.am.mkhc  79 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEY 157
                                     69***************************************************************************** PP

                           NF-YB  80 veplkvylkkyreleg 95 
                                     +eplkvyl+kyre+ +
  Zpz_sc00180.1.g00430.1.am.mkhc 158 IEPLKVYLQKYREVLS 173
                                     *************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-5378179IPR009072Histone-fold
SuperFamilySSF471131.18E-3982179IPR009072Histone-fold
PfamPF008083.2E-2885149IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-22113131No hitNo description
PROSITE patternPS006850116132IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-22132150No hitNo description
PRINTSPR006151.3E-22151169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
RPHRCSARSL APPPRPPPSP RPRHLASFLH VARARAYIRV SVGWVVVQDH RMADGPTSPG  60
GGGGSHESGS PRGGGGGGVR EQDRFLPIAN ISRIMKKAVP ANGKIAKDAK ETVQECVSEF  120
ISFITSEASD KCQREKRKTI NGDDLLWAMA TLGFEEYIEP LKVYLQKYRE VLSKRDGVKT  180
VELLTTPFIG LVEDIKKWAS KEHTTKEWVI CSLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-4878170193NF-YB
4awl_B3e-4878170294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4878170294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00300DAPTransfer from AT2G38880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00180.1.g00430.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0090781e-118BT009078.1 Triticum aestivum clone wkm1c.pk0002.d7:fis, full insert mRNA sequence.
GenBankKM0787351e-118KM078735.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-A2) mRNA, complete cds.
GenBankKM0787361e-118KM078736.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-B2) mRNA, complete cds.
GenBankKM0787371e-118KM078737.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022145604.17e-67nuclear transcription factor Y subunit B-1 isoform X1
TrEMBLV4SNQ47e-66V4SNQ4_9ROSI; Uncharacterized protein
STRINGXP_010244998.16e-66(Nelumbo nucifera)
STRINGXP_010253500.18e-66(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-60nuclear factor Y, subunit B3