PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00187.1.g00070.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 335aa MW: 35952.2 Da PI: 7.6942

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00187.1.g00070.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.6e-10	147	184	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 kr +r NR +A+rsR RK+++i eLe+ v +L+ Zpz_sc00187.1.g00070.1.am.mk 147 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQVD 184 5999****************************999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-5	144	202	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-9	148	189	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.7E-10	148	183	No hit	No description
Pfam	PF00170	1.7E-8	148	183	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.51E-17	149	182	No hit	No description
PROSITE pattern	PS00036	0	151	166	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAQLPPRIPA AVHHCPEGGH HGAASAWADD FVEFAASRRG AHRRSLSDSV AFVEVAPADG 60 GAGEFDRLDD DQLMSMFPDE GGSASAPGSE NGGSDSDGRD KRPAAAAVGA GKECADERNG 120 NVVAKEPVPG QDAAATVAAP TELIRDPKRV KRILANRQSA QRSRVRKLQY ISELERSVTT 180 LQVDRLHMLA PNSNSVASEN PCACVVWSRG GRRPFAWQPR DATHLASSSP ELVAGSSSSR 240 VPSPVHNEVS VLSPRVAFLD QQRTILTVGN SHLKQRIAAL AQDKIFKDAH QEALKKEIER 300 LRQVYEQQNL KMSAGAPASE HGPPPPVRAE KELMS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00187.1.g00070.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039136	9e-93	BT039136.1 Zea mays full-length cDNA clone ZM_BFb0374H13 mRNA, complete cds.
GenBank	BT087285	9e-93	BT087285.1 Zea mays full-length cDNA clone ZM_BFb0029G15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969997.1	1e-112	basic leucine zipper 6
Swissprot	Q5JMK6	3e-82	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	K3XKX3	1e-110	K3XKX3_SETIT; Uncharacterized protein
STRING	Pavir.Ea02752.1.p	1e-112	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1322	38	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	6e-49	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]