PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00188.1.g00130.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SRS
Protein Properties Length: 453aa    MW: 46232.9 Da    PI: 9.4649
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00188.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702219.95.4e-682223882154
                        DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkr 76 
                                   +sg+++CqdCGnqakkdC+h+RCRtCCksrgfdC+th+kstWvpaa+rrerqq   + s++++ ++       +++sk++r
  Zpz_sc00188.1.g00130.1.am.mk 222 GSGATTCQDCGNQAKKDCSHNRCRTCCKSRGFDCSTHIKSTWVPAARRRERQQLGGSGSASSSPATattaaaVASTSKKPR 302
                                   57889**********************************************998765443332222234433344444444 PP

                        DUF702  77 elkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiL 147
                                       ++q+++s+t++s+a+++++++t+s          lP++v+++avf+cvrv+s+ddge+e+aYq+ v+i+GhvfkG+L
  Zpz_sc00188.1.g00130.1.am.mk 303 --LLSSQTTTSHTSTSNATTPRSFDTTSshqdasfrdsLPRQVRAPAVFKCVRVTSIDDGEDEYAYQAMVTINGHVFKGFL 381
                                   ..56999999***************99999*************************************************** PP

                        DUF702 148 ydqGlee 154
                                   ydqG+++
  Zpz_sc00188.1.g00130.1.am.mk 382 YDQGVDD 388
                                   ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.8E-63225387IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.7E-27227269IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.9E-28339386IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MRERRRREGS GQAREKPIKG RAVPRTAKGR RAISVASGRR LPSDTGAFAD WVASSAAAAA  60
GRGDDLSLGF NASAAAAAAA AAASXXXXSG TSLGAGLWGP AASSSTASMR QAAAAMNYGM  120
ADVGMVVVAP AASFLHTHHH HHHHDAAAAA AAADPIFPLL SGGPSVLDPE TARSGAPSSS  180
AIQFWQSPPP AGANPNPSAS SPFAYLKKPL PMLDTGGGGS SGSGATTCQD CGNQAKKDCS  240
HNRCRTCCKS RGFDCSTHIK STWVPAARRR ERQQLGGSGS ASSSPATATT AAAVASTSKK  300
PRLLSSQTTT SHTSTSNATT PRSFDTTSSH QDASFRDSLP RQVRAPAVFK CVRVTSIDDG  360
EDEYAYQAMV TINGHVFKGF LYDQGVDDGR HGSTSNDDST AGVPNMSELH LGGGPGSSNA  420
REGGSSMLPT ELYGGGVGGQ NMMGGSGYGN TMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00188.1.g00130.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818814.11e-156protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0E0JTQ81e-161A0A0E0JTQ8_ORYPU; Uncharacterized protein
STRINGOPUNC01G43150.11e-162(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-58Lateral root primordium (LRP) protein-related