PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00188.1.g00560.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 219aa    MW: 24260.1 Da    PI: 5.2132
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00188.1.g00560.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.42e-17311517128
                           NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk..a 85 
                                   F+Pt++elv ++L+++++g + +++ ++ e+d +++ PwdL +++   +++ +f + r ++ +     +r++  g W   a
  Zpz_sc00188.1.g00560.1.sm.mk  31 FDPTEDELVLHFLRPQLRGFPPRVAGAVVEADPCSAAPWDLLARYGL-RDQGHFSAARGRSRP---SVRRSVGGGAWMrsA 107
                                   9***********************999**************855544.456688888888766...689999*****8557 PP

                           NAM  86 tgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                                   t + ++v + +  + + +  + fy  g+  k ++t Wvm+ey++
  Zpz_sc00188.1.g00560.1.sm.mk 108 TKSGRSVSDLGLVVRWRRAKFCFYvIGEVGKQRSTGWVMEEYEV 151
                                   7778899888888999999*****7678889999********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.21425177IPR003441NAC domain
PfamPF023651.5E-1031151IPR003441NAC domain
SuperFamilySSF1019411.7E-2731176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MADEANLSAE EKEEEEHDGD AADLSSSADV FDPTEDELVL HFLRPQLRGF PPRVAGAVVE  60
ADPCSAAPWD LLARYGLRDQ GHFSAARGRS RPSVRRSVGG GAWMRSATKS GRSVSDLGLV  120
VRWRRAKFCF YVIGEVGKQR STGWVMEEYE VTDPQCYRRD DEGEEDGYWV LCRVRKSRKT  180
AVTAAEASSS PSPQGSMLRQ RMLAAGYPVG VEAERLVLF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00188.1.g00560.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770681e-35AK377068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3147G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816116.11e-81NAC domain-containing protein 18-like
TrEMBLA0A0A9C0L51e-105A0A0A9C0L5_ARUDO; Uncharacterized protein
STRINGSb03g045610.12e-73(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39610.15e-07NAC domain containing protein 6