PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00195.1.g00200.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 498aa    MW: 54767.6 Da    PI: 7.0723
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00195.1.g00200.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.92.7e-57301396297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyv+p
  Zpz_sc00195.1.g00200.1.am.mk 301 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDP 381
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   lk yl+k+re+ege+
  Zpz_sc00195.1.g00200.1.am.mk 382 LKHYLHKFREIEGER 396
                                   ************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.1E-55298422IPR009072Histone-fold
SuperFamilySSF471136.99E-41303426IPR009072Histone-fold
PfamPF008082.7E-27306370IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.8E-19334352No hitNo description
PROSITE patternPS006850337353IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.8E-19353371No hitNo description
PRINTSPR006155.8E-19372390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MDLFERKPLI RSLIEEELFR LSEEAEKEEL EEEEEAEAKA RAEQSTKDCG NGNEKDVRGD  60
GKAEDASKEN NSNVAIHDCP KDGAVENGKT GDDVKDDSNG IAKGSQIANP TWQTGQSCTS  120
QVGRRPTCFR AHRNGQDASY VESIHAFPGP PQRPGCVLRG VHPRRCHRQV AHTYQETNGL  180
RRTTFTPGCI LIRAIQRTRH SPPPSRFKLE LRRPHSSRKF SPFLSFLSSV DPACCSYTTR  240
DWLQLFDEIS IGFSVHRALF LELSNRGGRE DRPERGGLGM PDSNNDSGEP SNAGGELSSP  300
REQDRFLPIA NVSRIMKKAL PANAKISKDA KETVQECVSE FISFITGEAS DKCQREKRKT  360
INGDDLLWAM TTLGFEDYVD PLKHYLHKFR EIEGERAAAS SGAGSSTAAT QQQYQHQQND  420
MSRNANAGAA YGGYGAGGMM MMMGQPMYGG STQQQPPPPQ QQQHQQHHMA MPGRGGYGHP  480
SGGGGSSSSS GLGRQDRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-42295391197NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00195.1.g00200.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560971e-169EU956097.1 Zea mays clone 1557377 nuclear transcription factor Y subunit B-3 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-65nuclear factor Y, subunit B3