PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00196.1.g00210.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 337aa    MW: 36373.4 Da    PI: 7.2387
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00196.1.g00210.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.63.9e-1471152286
                      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessst 78 
                                   W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +++ + +       +
  Zpz_sc00196.1.g00210.1.sm.mk  71 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSRDGYSKapkSNVQCKNRIDTLKKKYKVERAKQAS-------S 144
                                   *************************************87778876333778**************99998886.......5 PP

                      trihelix  79 cpyfdqle 86 
                                   +++fd+l+
  Zpz_sc00196.1.g00210.1.sm.mk 145 WQFFDRLD 152
                                   99**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.7E-2369153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDDDDDVSGS ASPSPDSSPA ASALPVADPV TVAAAPPGGA FALALPIQRT AASLYPTSGG  60
GGGGGGREDA WSEGATSALI DAWGERFVAL GRGSLRHPQW QEVADAVSSR DGYSKAPKSN  120
VQCKNRIDTL KKKYKVERAK QASSWQFFDR LDVLLAPTYG QKPAAAGQKH VPNGRNPVHT  180
ALHVGFPHPQ RSRTPLMPSA VKRREPSPEP SASLESSDGF PPPALPAANG KRRRTDEDHG  240
DGDSDHERAQ GLRELSLVIR RLGEAYERVE TAKLEQAMET ERQRMEFARE LESQRVQFFL  300
NAQMDLTQSK NQSSPAAATI PSSAKTVGEW IRWEGYL
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00196.1.g00210.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197552.11e-149trihelix transcription factor ASIL2-like
SwissprotQ9LJG83e-38ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLF2CYX61e-149F2CYX6_HORVV; Predicted protein
STRINGTraes_2BL_0C45635DD1.41e-147(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.14e-41sequence-specific DNA binding transcription factors