PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00200.1.g00500.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 206aa    MW: 23051.5 Da    PI: 10.8946
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00200.1.g00500.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.3e-18118165148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT  Ed +lvd+vk++G g+W+++ +  g+ R++k+c++rw ++l
  Zpz_sc00200.1.g00500.1.am.mk 118 KGPWTSAEDSILVDYVKKHGEGNWNAVQKNTGLSRCGKSCRLRWANHL 165
                                   79******************************************9996 PP
2Myb_DNA-binding24.18.4e-08171200131
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartm 31 
                                   +g++T++E+ l+++++ ++G++ W++ a+++
  Zpz_sc00200.1.g00500.1.am.mk 171 KGAFTPDEERLIIQLHSKMGNK-WARMAAHV 200
                                   799*******************.*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.31113169IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-23114168IPR009057Homeodomain-like
SuperFamilySSF466894.12E-25115200IPR009057Homeodomain-like
SMARTSM007177.8E-15117167IPR001005SANT/Myb domain
PfamPF002497.4E-16118165IPR001005SANT/Myb domain
CDDcd001677.33E-12120165No hitNo description
Gene3DG3DSA:1.10.10.607.1E-14169200IPR009057Homeodomain-like
PROSITE profilePS512949.918170206IPR017930Myb domain
SMARTSM007170.94170206IPR001005SANT/Myb domain
PfamPF002495.8E-7171200IPR001005SANT/Myb domain
CDDcd001670.00144173200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRPRPIACLL WRSEILLRFP LLSSPSFQQS AAELTRAGEP LVELNSAHPG LDRLRRLRDS  60
VSWRVSTPGK RAVSRSVSHR AMFRVKSESD CEMVPLDQMD SPAADDGGSP HRGPPLKKGP  120
WTSAEDSILV DYVKKHGEGN WNAVQKNTGL SRCGKSCRLR WANHLRPNLK KGAFTPDEER  180
LIIQLHSKMG NKWARMAAHV SAMLIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-2111319722105MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00200.1.g00500.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1149386e-96EF114938.1 Triticum aestivum strain CRB-INRA-CFD-6086 transcription factor (MybB) gene, partial cds.
GenBankEF1149396e-96EF114939.1 Triticum aestivum strain CRB-INRA-CFD-6529 transcription factor (MybB) gene, partial cds.
GenBankEF1149406e-96EF114940.1 Triticum turgidum subsp. durum strain CRB-INRA-CFD-7657 transcription factor (MybB) gene, partial cds.
GenBankEF1149416e-96EF114941.1 Triticum aestivum strain CRB-INRA-CFD-8048 transcription factor (MybB) gene, partial cds.
GenBankEF1149426e-96EF114942.1 Triticum aestivum strain CRB-INRA-CFD-8058 transcription factor (MybB) gene, partial cds.
GenBankEF1149436e-96EF114943.1 Triticum aestivum strain CRB-INRA-CFD-964 transcription factor (MybB) gene, partial cds.
GenBankEF1149446e-96EF114944.1 Triticum aestivum strain CRB-INRA-CFD-9048 transcription factor (MybB) gene, partial cds.
GenBankEF1149456e-96EF114945.1 Triticum aestivum strain CRB-INRA-CFD-13310 transcription factor (MybB) gene, partial cds.
GenBankEF1149466e-96EF114946.1 Triticum aestivum strain CRB-INRA-CFD-13471 transcription factor (MybB) gene, partial cds.
GenBankEF1149476e-96EF114947.1 Triticum aestivum strain CRB-INRA-CFD-13476 transcription factor (MybB) gene, partial cds.
GenBankEF1149486e-96EF114948.1 Triticum aestivum strain CRB-INRA-CFD-13481 transcription factor (MybB) gene, partial cds.
GenBankEF1149496e-96EF114949.1 Triticum aestivum strain CRB-INRA-CFD-13811 transcription factor (MybB) gene, partial cds.
GenBankEF1149506e-96EF114950.1 Triticum aestivum strain CRB-INRA-CFD-15658 transcription factor (MybB) gene, partial cds.
GenBankEF1149516e-96EF114951.1 Triticum aestivum strain CRB-INRA-CFD-1110 transcription factor (MybB) gene, partial cds.
GenBankEF1149526e-96EF114952.1 Triticum aestivum strain CRB-INRA-CFD-1192 transcription factor (MybB) gene, partial cds.
GenBankEF1149536e-96EF114953.1 Triticum aestivum strain CRB-INRA-CFD-1232 transcription factor (MybB) gene, partial cds.
GenBankEF1149546e-96EF114954.1 Triticum aestivum strain CRB-INRA-CFD-1288 transcription factor (MybB) gene, partial cds.
GenBankEF1149556e-96EF114955.1 Triticum aestivum strain CRB-INRA-CFD-2135 transcription factor (MybB) gene, partial cds.
GenBankEF1149566e-96EF114956.1 Triticum aestivum strain CRB-INRA-CFD-2153 transcription factor (MybB) gene, partial cds.
GenBankHG6703066e-96HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564452.11e-71transcription factor GAMYB
SwissprotA2WW878e-71GAM1_ORYSI; Transcription factor GAMYB
TrEMBLI1HSP43e-70I1HSP4_BRADI; Uncharacterized protein
STRINGBRADI2G53010.15e-71(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.17e-53myb domain protein 33