PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00206.1.g00030.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 340aa MW: 36966.6 Da PI: 10.2163

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00206.1.g00030.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.7	2.6e-12	35	121	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrt 72 +W++ e+ aL+ a ++ +++rg+l++++W+ev++ + + r+ +qCk++ + l+k+yk+++ + Zpz_sc00206.1.g00030.1.sm.mkhc 35 CWSDGETAALVSAWGSRYIEVNRGNLRQKQWQEVADDVnsrrgasVRCRPPRTDVQCKNRVDTLKKKYKAERVRGAP-- 111 7************************************9888654445589*************99877775.. PP trihelix 73 sessstcpyfdqle 86 s +++f++l+ Zpz_sc00206.1.g00030.1.sm.mkhc 112 ----SGWSFFHELD 121 ....5699*998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.4E-25	33	123	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MEVREMAMAA AAAATGGGGG KLPPPNPNLP YREDCWSDGE TAALVSAWGS RYIEVNRGNL 60 RQKQWQEVAD DVNSRRGASV RCRPPRTDVQ CKNRVDTLKK KYKAERVRGA PSGWSFFHEL 120 DRLVGPTLNG SVSKKPSPSP APFQFALPVQ SSAIRKPPSP SMSPSPPPPM ALPLPNYRHG 180 SPIPAAALIQ QEAAAAAAAM SDSEDSGDAG GRNNYNSQQS PSRSVSPISG NKKKRSRHEA 240 ESIGDRAFRE LARAIEAFAE MYERVENAKQ KHELEMERQR IDFLKQLEVK RMENFADAHV 300 KLIRVKRTKK TAGSGGSAED AAGVESSAIS AQQCHSQVKA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00206.1.g00030.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002440242.1	1e-128	trihelix transcription factor ASIL2
TrEMBL	A0A0A9IAS8	1e-141	A0A0A9IAS8_ARUDO; Uncharacterized protein
STRING	Pavir.J33948.1.p	1e-130	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2065	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	9e-33	sequence-specific DNA binding transcription factors