PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00206.1.g00150.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 307aa    MW: 33727.5 Da    PI: 9.18
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00206.1.g00150.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.21.2e-30722131128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                                   lp+G++F+Ptd+ l+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v+++    +fF++ +k+y+t
  Zpz_sc00206.1.g00150.1.sm.mk  72 LPAGVKFDPTDQVLL-EHLEGKARPESrklhplV---DefipTIEGEdGICYTHPKRLP-GVSKDGLVRHFFHRPSKAYTT 147
                                   799*********999.99****999985665442...133334666646**********.555666688************ PP

                           NAM  71 gkrknra.......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   g+rk r+         + +W++tgk+++vl+ +g++ g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zpz_sc00206.1.g00150.1.sm.mk 148 GTRKLRKlhrddedGGETRWHKTGKTRPVLA-NGSVRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 213
                                   ******8555554433778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-3565232IPR003441NAC domain
PROSITE profilePS5100530.81372232IPR003441NAC domain
PfamPF023651.4E-1373213IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVSPTSVRAA AETPASVVAA TAGKMAAASL AVLVEMCRSC GHRARTAAHM HESPTLPPDD  60
MLREMTTTIQ DLPAGVKFDP TDQVLLEHLE GKARPESRKL HPLVDEFIPT IEGEDGICYT  120
HPKRLPGVSK DGLVRHFFHR PSKAYTTGTR KLRKLHRDDE DGGETRWHKT GKTRPVLANG  180
SVRGYKKILV LYTNYGKQRK PEKTNWVMHQ YHLGLEEEER DGELVVSKVF FQTQPRQCGS  240
ATAAAKDPAG AANNNPVISG GALAGHTVLR EANLLPEQCQ LIITGIAFQS QSIPFSINRL  300
QLSSEKV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00206.1.g00150.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5507060.0KU550706.1 Bambusa emeiensis NAC1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639992.11e-121NAC domain-containing protein 73
SwissprotO494591e-106NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1E5VZX81e-125A0A1E5VZX8_9POAL; NAC domain-containing protein 73
STRINGOPUNC05G23360.11e-121(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.12e-96NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]