PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00208.1.g00150.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 756aa    MW: 81044.8 Da    PI: 8.8738
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00208.1.g00150.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.21.3e-891114752374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   + lL+ecA avs g+l+ a+ +L +ls++asp++ +  +Rl+ayft+A+aarl++s+ ++++ l+p  ++      + aa+
  Zpz_sc00208.1.g00150.1.am.mk 111 IALLMECAVAVSVGNLADANGMLLELSQMASPYApSCGERLVAYFTKAMAARLMSSWVGVCAPLAPPWSA------VHAAF 185
                                   689*******************************8889***********************999887776......56789 PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160
                                   ++f++v P+ +f++l++Nqa+lea++g++ vHi+D+d+  G  lQW++Ll aLasRp+gpp lR+Tg+g     s+ +++ 
  Zpz_sc00208.1.g00150.1.am.mk 186 RAFYNVAPFARFAYLACNQAVLEAFHGKRLVHIVDLDMVPGgaLQWLSLLPALASRPGGPPLLRVTGFGM----SASAVRD 262
                                   99************************************988447**************************....9****** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledle.leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                                   tg++L+ +A++lg+pfef + vakr  d++   +   k+ gEa+aV++    h l+d  ++       +L+lv+ l+Pkv+
  Zpz_sc00208.1.g00150.1.am.mk 263 TGNQLTGLARKLGIPFEFYA-VAKRPGDVNaAADVPSKRpGEAVAVHWLR--HALYDAAGDDGA----TLRLVRWLEPKVM 336
                                   ********************.6777777751556655556********98..888865565555....************* PP

                          GRAS 240 vvveqe......adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetle 313
                                   ++veqe         +++ Fl+rf++al++ysalfds+ a+ p+++   r+ vE  +lgrei+nv+a  g +r  r+ +++
  Zpz_sc00208.1.g00150.1.am.mk 337 TLVEQErgalgdGGAGHGHFLDRFVSALHHYSALFDSMGASRPADEdASRHLVEDGVLGREIMNVLAVGGPSRSGRE-KFG 416
                                   ******655433334556********************88888877699***********************88775.5** PP

                          GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                    W+  l++ GF  +  + +a+         ++ + gy+v ++++  v lgWk+ pL++vS W+
  Zpz_sc00208.1.g00150.1.am.mk 417 CWQTELGRHGFLRAGGGARAQLV----AGACPaGLGYTVADDRDGTVrLGWKGTPLYTVSTWT 475
                                   ***********999888776555....555666677***977555555**************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.17184457IPR005202Transcription factor GRAS
PfamPF035144.6E-87111475IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MATGRRSDMQ DYLGLMQFHD QYLYGGSAGA ANNLPLQHHF LHHPQQGFVH GRERFTGKDH  60
VLEFAEPAAD ASEQDLAAAC TEVSGGGDDA AEERNGAAAR CEEEAHGVRM IALLMECAVA  120
VSVGNLADAN GMLLELSQMA SPYAPSCGER LVAYFTKAMA ARLMSSWVGV CAPLAPPWSA  180
VHAAFRAFYN VAPFARFAYL ACNQAVLEAF HGKRLVHIVD LDMVPGGALQ WLSLLPALAS  240
RPGGPPLLRV TGFGMSASAV RDTGNQLTGL ARKLGIPFEF YAVAKRPGDV NAAADVPSKR  300
PGEAVAVHWL RHALYDAAGD DGATLRLVRW LEPKVMTLVE QERGALGDGG AGHGHFLDRF  360
VSALHHYSAL FDSMGASRPA DEDASRHLVE DGVLGREIMN VLAVGGPSRS GREKFGCWQT  420
ELGRHGFLRA GGGARAQLVA GACPAGLGYT VADDRDGTVR LGWKGTPLYT VSTWTWCPAS  480
HTPPCTHQDE LMPPSGLGLG HFRQPCVEAS QSTMSESILM TKTKLDPLPP LPRPAPQRVD  540
PLRPAPTLLP PLPAVAGRLG TSTRRHAPSP SPSLPAAPGT SPAPAXXLYA PAHRPPLPAV  600
AGCPGHLHAP ARWLVAHHTP RPGHLPEPVR RPTPARNGRR PRPFPAFPAV REPPRAGKPR  660
SDLATSPWQD HHRRSSRPTA GAAPSCRAIV MRMEDEVLVR HGYSLSAVLD GHASFSAIRF  720
LRPPCSKDRA ATPRRRHCPR DTPDPTTLNA RTSHLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-99944753379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00208.1.g00150.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806715.10.0protein SCARECROW-like
TrEMBLA0A1E5V1Z10.0A0A1E5V1Z1_9POAL; Protein SCARECROW
STRINGSi021890m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-97GRAS family protein