PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00209.1.g00360.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 193aa    MW: 21797.2 Da    PI: 9.6467
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00209.1.g00360.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.48.1e-144891447
                                  S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  W+teE+ +++++   +G ++Wk Iar++ k+Rt+ q+ s+ qky
  Zpz_sc00209.1.g00360.1.am.mk 48 WSTEEHRQFLRGLCVYGRRDWKNIARHFVKTRTAVQVSSHAQKY 91
                                  *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7364096IPR017930Myb domain
SuperFamilySSF466894.04E-164196IPR009057Homeodomain-like
SMARTSM007177.6E-104494IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-104493IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-124495IPR006447Myb domain, plants
CDDcd001671.18E-94891No hitNo description
PfamPF002491.0E-94891IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MQREVLYDDP AMDNMDVLLG PVNVVDTTRA RRQPPRYPRA LRNKGRFWST EEHRQFLRGL  60
CVYGRRDWKN IARHFVKTRT AVQVSSHAQK YYRRQESGAA RQQYSINDVG LYDAEPWAAP  120
TNNSSGSWET LSFAGGDYNN SNGYIAFGQQ APAQPALTMN NPAPAMNNPA PTMNNTTSAM  180
NYTALAMNYT DPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00209.1.g00360.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966689.19e-46uncharacterized protein LOC101759880
TrEMBLK3Y1272e-44K3Y127_SETIT; Uncharacterized protein
STRINGSi007889m4e-45(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.23e-20MYB family protein