PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00210.1.g00550.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 341aa    MW: 36363.9 Da    PI: 8.4582
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00210.1.g00550.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33e-07280322343
                                   SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                                    W+t +d  l++a k+++++   +W+++a+ ++ g+t   c  r
  Zpz_sc00210.1.g00550.1.sm.mk 280 DWSTGDDRALLNALKEFPKDtamRWEKVAAAVP-GKTKAACMKR 322
                                   6********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.831188229IPR017877Myb-like domain
SMARTSM007170.057192244IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-4193230IPR009057Homeodomain-like
SuperFamilySSF466895.23E-7194234IPR009057Homeodomain-like
CDDcd001674.80E-4196237No hitNo description
PROSITE profilePS500906.702273327IPR017877Myb-like domain
SMARTSM007178.2E-6277329IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-9277327IPR009057Homeodomain-like
PfamPF002494.6E-6280322IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-5280326IPR009057Homeodomain-like
CDDcd001671.77E-6281327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
DHSSRLLRYS YFTSPDFGDP RPRAPAATME FIDEWDYQPR ARVVHSGANS TPSSSTATGK  60
SSPTLPHAAA CAAAAVLLIA AAYYLPAAYQ VFSSMLIWIA ASLLLAPFAP SSATGSDISV  120
GRGRLIPAPE PAQEPISDPV PAPRRGRRQN PTAPQPKLSD PITAPVQPAA SLQPLREAAA  180
VADGCEKEEE GDDGEWTDQE LELLRRQMVK HPAGEPQRWE KIAAAFGGRR RPESVIHAAK  240
SGAAVSAGGS FEQFLRKRKP LDPRAEAVDA GGNTGGADSD WSTGDDRALL NALKEFPKDT  300
AMRWEKVAAA VPGKTKAACM KRVTELKRDF RSSKGASEAA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254259LRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00210.1.g00550.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972787.11e-139dnaJ homolog subfamily C member 2
TrEMBLK3YIP41e-138K3YIP4_SETIT; Uncharacterized protein
STRINGSi014113m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-52MYB_related family protein