PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00217.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 126aa    MW: 14320.8 Da    PI: 11.3298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00217.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000144431255
                                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                    RR++i +++  L++l+  +    +k   Ka +L +  +Y++sLq
  Zpz_sc00217.1.g00060.1.sm.mkhc  4 RRKKISERMKLLQDLVSRC----NKVTGKAVMLDEISNYVQSLQ 43
                                    9*****************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.029142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-10355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-10453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-4447No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MHLRRKKISE RMKLLQDLVS RCNKVTGKAV MLDEISNYVQ SLQRQVEMML SQDRHIAFYG  60
ADPGSTSLVA QYNQAIMQLK MGTVRNVSTV NQGSGIRRRG SPAARLFRSC PFKTPLFALY  120
RPSFPV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00217.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463945.14e-36transcription factor bHLH49 isoform X2
TrEMBLA0A1E5V8D92e-35A0A1E5V8D9_9POAL; Transcription factor bHLH74 (Fragment)
STRINGSb01g009380.11e-35(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.26e-21bHLH family protein