PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00218.1.g00160.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 709aa    MW: 77225.8 Da    PI: 9.762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00218.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12451494755
                                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   ++Er RR+r+N+++  Lr+++P+      +K++Ka+i + A+ YI +Lq
  Zpz_sc00218.1.g00160.1.am.mk 451 AMERDRRRRLNEKLYALRSVVPNI-----TKMDKASIIRDAIAYIEKLQ 494
                                   79*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-16444509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.025444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-15450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15451513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-14451498No hitNo description
PfamPF000101.3E-9451494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
LNTIPLPPLH FWCCPIPTGN RLPPSRLLFD VLALSLSRLV ICASTLSTAA VPVDALPHPA  60
PRRSGTSDSS HLLVPMGHRR AGCASGPIGL APEHGTLQHG PHSPSCLVGY AYLGRIAVQA  120
GSSRKSMKLV EQISRVARPV GTSWCDTVTA LDSGSKAWRV LDVEQGTHVV VAVACCPPQL  180
ASHRRDRPPH LAHHHRSCRA CTPHFGLASM SFSPIPITGG QPTRVEWSRY LGPRRGLSGP  240
PPFPALTSGV SIHLLVTRCS LLSVSSLLCV AWLRSSSPFQ IKHWRFSRKN MAISGWQTRA  300
LDQRAWRVQV RHASSCLQLA SVQGQSVPEL GLQMDVLGVG FDFYWTPPPR LVLDTPDLDD  360
LSDFSFSRYL LLLCFFLVMM AGIVDCNCVS MYMPVAPADS LSSGLYPYRE GSNSPDGANS  420
YTTAAAVPTA PSSPPPQQLM PGRDAASRNM AMERDRRRRL NEKLYALRSV VPNITKMDKA  480
SIIRDAIAYI EKLQEEERRM LAEIAALESS TAAVEAEDAG GLAGDDADSF PCPKKPRRAP  540
PADDGARRAP SAPPVQILEE MRSCDAQVQV SEAGERVAVV SVRCSRGRDA VSKVCRALEP  600
LRLRIVTATV AAVGDTVVHT IATSQLVSLP STGTPHRRQF GTMVYKIGLP AGDEVPTICR  660
RSRERDREEQ RSGGRKNREE RRQVHPLVAT HANRALARTH TAPKRRVLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-15442522282Transcription factor MYC2
5gnj_B8e-15442522282Transcription factor MYC2
5gnj_E8e-15442522282Transcription factor MYC2
5gnj_F8e-15442522282Transcription factor MYC2
5gnj_G8e-15442522282Transcription factor MYC2
5gnj_I8e-15442522282Transcription factor MYC2
5gnj_M8e-15442522282Transcription factor MYC2
5gnj_N8e-15442522282Transcription factor MYC2
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00218.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.34e-25bHLH family protein