PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00220.1.g00050.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 215aa MW: 23133.7 Da PI: 9.5947

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00220.1.g00050.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	48.3	2.3e-15	41	71	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++A+Pk+ilelm+v+gLt+e+v+SHLQk+Rl Zpz_sc00220.1.g00050.1.sm.mkhc 41 DEAVPKKILELMNVPGLTRENVASHLQKFRL 71 78****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	5.8E-5	15	40	No hit	No description
SuperFamily	SSF46689	1.97E-9	35	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-13	41	71	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.3E-15	41	76	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MAAAAQARGG EFPVGMKVLV VDDDPTCLLV LKKMLDECKY DEAVPKKILE LMNVPGLTRE 60 NVASHLQKFR LYLKRIAQHH AGIAHPFAPS ASSAKVAPLG GFDLQALAAS GQIPQALAAL 120 QDELLGRPTS SLPLPGRDQS SLRLAAIKGN KPHGEREIAF GQPIYKCQNN AYGNAMGVSS 180 KPQVVLKTES SDSLRHSYGY VSGSAGLIRE HWKQI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00220.1.g00050.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB060130	1e-129	AB060130.1 Zea mays ZmRR8 mRNA for response regulator 8, complete cds.
GenBank	EU975545	1e-129	EU975545.1 Zea mays clone 492147 two-component response regulator ARR1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001104861.2	3e-77	response regulator 8
Refseq	XP_008648025.1	1e-77	response regulator 8 isoform X1
Swissprot	A2XE31	2e-76	ORR21_ORYSI; Two-component response regulator ORR21
Swissprot	Q8H7S7	2e-76	ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBL	Q9AV93	5e-76	Q9AV93_MAIZE; Two-component response regulator
STRING	GRMZM2G099797_P01	1e-76	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5796	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-28	response regulator 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]