PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00227.1.g00450.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 342aa    MW: 36356.8 Da    PI: 9.9065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00227.1.g00450.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-102773161255
                                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  Zpz_sc00227.1.g00450.1.am.mk 277 RRTRISERIRKLQELVPSM----EKQTNTADMLDLAVDYIKDLQ 316
                                   9*****************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.014265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-8267321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-13276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-8277316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-14278331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-8281320No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MYGSTVSKDL NLPAVQPQPA TGARTPPPQM SSSGLLRYRS APSNLLGEVC VEDFHAAEGG  60
AAGHPRPDHA ADAALARLLR QSSSPAGFLN HLHMDNGYGN MLRAGGFRNG GDARVKGQLS  120
YSSRQGSVMS QISEMGSEEL GGSSPEAGSN GATAGRSYRG IPATGYNAMD ATDQSHLSGA  180
KRPRGPASDP AHALPAQNGH HLVPQLSLPS GGGGGNGKTS ADMAAIEKFL QFQDAVPCKI  240
RAKRGCATHP RSIAERVPPP FLPPLARSRD RVVNVVRRTR ISERIRKLQE LVPSMEKQTN  300
TADMLDLAVD YIKDLQKQVK ELNDSRANCT CSASKRQNQF TC
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00227.1.g00450.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9565014e-58EU956501.1 Zea mays clone 1564739 mRNA sequence.
GenBankEU9699624e-58EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803424.11e-106transcription factor bHLH130-like
RefseqXP_025803426.11e-106transcription factor bHLH130-like
TrEMBLA0A0A9VBR81e-110A0A0A9VBR8_ARUDO; Uncharacterized protein
STRINGPavir.J14004.1.p1e-100(Panicum virgatum)
STRINGTRIUR3_26625-P11e-100(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-44bHLH family protein